Locus 2236

Sequence ID 3L_DroMel_CAF1
Location 6,213,892 – 6,213,984
Length 92
Max. P 0.869763
window3461

overview

Window 1

Location 6,213,892 – 6,213,984
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 87.68
Mean single sequence MFE -37.07
Consensus MFE -29.62
Energy contribution -31.23
Covariance contribution 1.62
Combinations/Pair 1.25
Mean z-score -2.89
Structure conservation index 0.80
SVM decision value 0.86
SVM RNA-class probability 0.869763
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6213892 92 + 23771897
GAUGCUAUUGCUAUCCGGAGCAAAAUGUUCCACGUCUGUUCCGUUGGGACUGUAGAAAGCGACUGACGGUUCUGGCGGCUAUGGCGUCAGUU
((((((((.((.....(((((.....))))).((((.(..((((..(..((......))...)..))))..).)))))).)))))))).... ( -37.00)
>DroSec_CAF1 4263 92 + 1
GAUGCUAUUGCUAUCCGGAGCAGAAUGUUCCACGUCUGUUCCGUUGGGACUGUAGAAAGCGACUGACGGUUCUGGCGGCUAUGGCGUCAGUU
((((((((.(((....((((((((.((.....))))))))))((..(((((((((.......)).)))))))..))))).)))))))).... ( -41.00)
>DroSim_CAF1 4318 92 + 1
GAUGCUAUUGCUAUCCGGAGCAGAAUGUUCCACGUCUGUUCCGUUGGGACUGUAGAAAGCGACUGACGGUUCUGGCGGCUAUGGCGUCAGUU
((((((((.(((....((((((((.((.....))))))))))((..(((((((((.......)).)))))))..))))).)))))))).... ( -41.00)
>DroEre_CAF1 4318 92 + 1
GAUGCUAUUGCUAUCCGGAGCAGAAUGUUCCACGUCUGUGUCGUUGGGACUGUAGAAUGCGACUGCCGGUUCUGGCGGCUAUGGCGUCAGUU
((((((((........(((((.....)))))........(((((..(((((((((.......))).))))))..))))).)))))))).... ( -35.80)
>DroYak_CAF1 4378 92 + 1
GAUGCUAUUGCUAUCCGGAGCAAAAUGUUCCACGUCUGUUCCGUUGGGACUGUAGAAAGCGACUGACGGUUCUGGCGGCAAUGGCGUCAGUU
(((((((((((.....(((((.....))))).((((.(..((((..(..((......))...)..))))..).))))))))))))))).... ( -41.10)
>DroAna_CAF1 4356 81 + 1
GAAG--------AUCCGCGCUCG--CG-UUCGCGUCUGUUCUGUUGGGAUCGCAGAUUGCGACUGACGGUUCUGCCGGCGAUGGCGUCAGUU
...(--------((..(((((((--(.-.(((((((((((((....)))..))))).)))))....(((.....)))))))..))))..))) ( -26.50)
>consensus
GAUGCUAUUGCUAUCCGGAGCAGAAUGUUCCACGUCUGUUCCGUUGGGACUGUAGAAAGCGACUGACGGUUCUGGCGGCUAUGGCGUCAGUU
((((((((.(((....((((((((.((.....))))))))))((..(((((((((.......))).))))))..))))).)))))))).... (-29.62 = -31.23 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:31 2006