Locus 2235

Sequence ID 3L_DroMel_CAF1
Location 6,213,680 – 6,213,789
Length 109
Max. P 0.989395
window3460

overview

Window 0

Location 6,213,680 – 6,213,789
Length 109
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 94.20
Mean single sequence MFE -27.36
Consensus MFE -26.23
Energy contribution -26.47
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.96
SVM decision value 2.16
SVM RNA-class probability 0.989395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6213680 109 - 23771897
AGCCUCAUCGGCAGUGCAUCUGGCGUAGCACGACAAUCUCCGUCAGAGACGGAGUUAAUUACCCAGAGCCAAGAACCCAUUCGAGACCAUCUCCGUACAUACACA--UAUC
.(((.....))).((((.(((((.((((.........(((((((...)))))))....)))))))))...............(((.....))).)))).......--.... ( -29.42)
>DroSec_CAF1 4049 109 - 1
AGCCUCAUCGGCAGUGCAUCUGGCGUAGCACGACAAUCUCCGUCAGAGACGGAGUUAAUUACCCAGAGCCAAGAACCCAUUCGAGACCAUCUCCGUACAUACACA--UAUC
.(((.....))).((((.(((((.((((.........(((((((...)))))))....)))))))))...............(((.....))).)))).......--.... ( -29.42)
>DroSim_CAF1 4102 109 - 1
AGCCUCAUCGGCAGUGCAUCUGGCGUAGCACGACAAUCUCCGUCAGAGACGGAGUUAAUUACCCAGAGCCAAGAACCCAUUCGAGACCAUCUCCGUACAUACACA--UAUC
.(((.....))).((((.(((((.((((.........(((((((...)))))))....)))))))))...............(((.....))).)))).......--.... ( -29.42)
>DroEre_CAF1 4114 111 - 1
UGCCUCAUCGGCAGUGCAUCUGGCAUAGCACCACAAUCUCCGUCAGAGACGGAGUUAAUUACCCAGAGCCAAGAACCCAUUCGCGACCAUCUCCGUAUAUAUCCAUUCAUC
((((.....))))((((...((((.............(((((((...))))))).............)))).(((....)))............))))............. ( -22.87)
>DroYak_CAF1 4169 111 - 1
AGCCUCAUCGGCAGUGCAUCUGGCGUAGCACCACAAUCUCCGUCAGAGACGGAGUUAAUUACCCACAGCCAAGAACCCAUUCGCGACCAUCUCCGUACACAUCCAACCAUC
.(((.....))).((((...((((.............(((((((...))))))).............)))).(((....)))............))))............. ( -25.67)
>consensus
AGCCUCAUCGGCAGUGCAUCUGGCGUAGCACGACAAUCUCCGUCAGAGACGGAGUUAAUUACCCAGAGCCAAGAACCCAUUCGAGACCAUCUCCGUACAUACACA__UAUC
.(((.....))).((((.((((((.............(((((((...))))))).............))).)))........(((.....))).))))............. (-26.23 = -26.47 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:30 2006