Locus 2232

Sequence ID 3L_DroMel_CAF1
Location 6,176,624 – 6,176,740
Length 116
Max. P 0.622610
window3455

overview

Window 5

Location 6,176,624 – 6,176,740
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -26.77
Consensus MFE -19.54
Energy contribution -20.23
Covariance contribution 0.69
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.73
SVM decision value 0.18
SVM RNA-class probability 0.622610
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6176624 116 - 23771897
UAGGGGUAUACCUGGGAAAAACAAGCCCCGCUCAAAUCACCCAGCAGGGCAAACGAUGAUUGGCGAACCUAAUAU---GUAUU-UUAAUCCCAUAUACACGAGUAUAUUAAUUAGGUAAA
........(((((((((.......((((.(((..........))).))))..(((...(((((.....))))).)---))...-....))))((((((....)))))).....))))).. ( -26.70)
>DroSec_CAF1 16339 117 - 1
UAGGGGUAUACCUGGGUAAAACAGGCCUUGCUCAAAUCACCCAGCAGGGCAAACGACGAUUGGCGGACCUAAUAUUAGGUAUA-UUAAUCCCAUAUACA--AGUUUAUUAAUUAAGUAAA
..(((((((((((((.........((((((((..........))))))))........(((((.....))))).)))))))))-)....))).......--................... ( -27.70)
>DroEre_CAF1 17520 117 - 1
AAGGGGUGUACCUGGGAAAAACAGGCCUUGCUCAAAUCACCCAGCAGGGCAAGCGAAGAUUGGAGAACCUAAUAUUACAUAUU-UCAA-GCCAAAUAUUAUAGAUC-AAAAGGAAAUGAG
..(..((((..(((.......)))((((((((..........))))))))........(((((.....))))).....)))).-.)..-.................-............. ( -20.90)
>DroYak_CAF1 16434 119 - 1
AAGGGGUAAACCUGGGAAAAACAGGCCUUGCUCAAAUCACCCAGCAGGGCAAACGACGAUUGGCGUACCUAAUAUUACCCAAUGUUAACCCCAUUUGUAAUAGAUC-AAAAUAAAAUAAG
..(((((.((((((.......)))((((((((..........))))))))........(((((.(((........))))))))))).))))).((((........)-))).......... ( -31.80)
>consensus
AAGGGGUAUACCUGGGAAAAACAGGCCUUGCUCAAAUCACCCAGCAGGGCAAACGACGAUUGGCGAACCUAAUAUUACGUAUU_UUAAUCCCAUAUACAAUAGAUC_AAAAUUAAAUAAA
..(((((....(((.......)))((((((((..........))))))))........(((((.....)))))..............)))))............................ (-19.54 = -20.23 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:25 2006