| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,175,994 – 6,176,114 |
| Length | 120 |
| Max. P | 0.923240 |
| Location | 6,175,994 – 6,176,114 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.83 |
| Mean single sequence MFE | -44.70 |
| Consensus MFE | -37.66 |
| Energy contribution | -39.22 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6175994 120 - 23771897 CUUGGAGAAGGCUAAGACGAACGUCUUUAGCAUAUUCUCCAGGUAGGGCACCAGUUGCGUGCAGGCCUCCUCCUCCAGAGCGACAAAGGCAGAGCACGCAGCUUCCUGAACGCGCUUAUU (((((((((.((((((((....))).)))))...)))))))))(((((....((((((((((..((((..((((....)).))...))))...)))))))))))))))............ ( -50.40) >DroSec_CAF1 15738 120 - 1 CUUGGAGACGGCCAAGACGAACGUCUUUAGCAUAUUCUCCAGGUAGGGCACCAGUUGCGUGCUGGCCUCCUCCUCCAGAGUGGCAAAGGCAGAGCACGCAGCUUCCUGAACGCGCUUAUU ((((((((..((.(((((....)))))..))....))))))))(((((....(((((((((((.((((...((........))...))))..))))))))))))))))............ ( -48.00) >DroSim_CAF1 16609 120 - 1 CUUGGAGAGGGCCAAGACGAACGUCUUUAGCAUAUUCUCCAGGUAGGGCACCAGUUGCGGGCUGGCCUCCUCCUCCAGAGUGGCAAAGGCAGAGCACGCAGCUUCCUGAACGCGCUUAUU (((((((((.((.(((((....)))))..))...)))))))))(((((....(((((((.(((.((((...((........))...))))..))).))))))))))))............ ( -45.30) >DroEre_CAF1 16890 120 - 1 CUUGGAGAAGGCAAAGACGAGCGUCUUUAGAAUAUACUCCAGGUAGGGCACCAGUUCCGUGCAGGCCUCCUCCUCCAGAGUGGCAAAGGCAGAGCACGCAGCUUCCUGAACGCGCUUAUU (((((((....(((((((....)))))).)......)))))))(((((....((((.(((((..((((...((........))...))))...))))).)))))))))............ ( -36.60) >DroYak_CAF1 15804 120 - 1 CUUGGAGAAGGCAAAGACGAGAGUCUUUAGGAUAUACUCCAGGUAGGGCACCAGUUCCGUGGAGGCCUCCUCCUCUAGGGUGGCAAGGGCGGAGCAUGCAGCUUCCUGAACGCGCUUAUU ...((((.((((((((((....))))))........(((((.(..((((....))))).))))))))).))))..(((((((...(((...((((.....)))))))...))).)))).. ( -43.20) >consensus CUUGGAGAAGGCAAAGACGAACGUCUUUAGCAUAUUCUCCAGGUAGGGCACCAGUUGCGUGCAGGCCUCCUCCUCCAGAGUGGCAAAGGCAGAGCACGCAGCUUCCUGAACGCGCUUAUU (((((((((.((..((((....))))...))...)))))))))(((((....((((((((((..((((...((........))...))))...)))))))))))))))............ (-37.66 = -39.22 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:24 2006