Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,174,356 – 6,174,448 |
Length | 92 |
Max. P | 0.524167 |
Location | 6,174,356 – 6,174,448 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 69.67 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -12.88 |
Energy contribution | -13.92 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.32 |
Mean z-score | -1.60 |
Structure conservation index | 0.49 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6174356 92 - 23771897 ---UAAAUGUGGGGUAAGGUCUGCCAAAGGGGG-CUACCGAAGUGACAGAGAAUGACACUCUGUUCUCGGCCUACUCAUAUCCCAUACAAAUC----------------AGA ---....(((((((((.(((((.(....).)))-)).((((.(.(((((((.......))))))))))))........)))))))))......----------------... ( -29.10) >DroSec_CAF1 14081 92 - 1 ---UAAAUGUGGGGUAAGGUCUGCCAAAGGAAG-CUACCGAAUUGACAGAGAAUGACACUCCGUUCUCGGCCUACUCAUAUCCCAUCCAAAUC----------------AGG ---.....((((((((.(((..(((...((...-...)).........(((((((......))))))))))..)))..)))))))).......----------------... ( -26.60) >DroSim_CAF1 14951 92 - 1 ---UAAAUGUGGGGUAAGGUCUGCCAAAGGGAG-CUACCGAAUUGACAGAGAAUGACACUCCGAUCUCGGCCUACUCAUAUCCCAUCCAAAUC----------------AGG ---.....((((((((.(((..(((...((...-...)).........((((.((......)).)))))))..)))..)))))))).......----------------... ( -23.90) >DroEre_CAF1 15195 103 - 1 ---UAUAUGUGGUG----GUCUGCCAAUGGUAUUCUGAUAAC-GAAUACACGAUGACACUCUGUUCUUGGCCUACUCAUAUAGCUCACAGAACAUU-UCUUACUGCCGCAUU ---...((((((..----((.((.((.((((((((.......-)))))).)).)).))...((((((((..(((......)))..)).))))))..-....))..)))))). ( -26.20) >DroYak_CAF1 14110 108 - 1 UUGUAUAUGUUGGGUAAUGUCUGCCAAAGG----CUAAUGGAGUGACAGAGAAUGACACUAUGUUCUUGGCCAACUUAUAUUGCCUCCAGAUAAUUUUUUUACCGCCGCAUG .....(((((.((((((((((((....(((----(.....((((....((((((........)))))).....)))).....)))).))))))......))))).).))))) ( -26.30) >consensus ___UAAAUGUGGGGUAAGGUCUGCCAAAGGGAG_CUACCGAAGUGACAGAGAAUGACACUCUGUUCUCGGCCUACUCAUAUCCCAUCCAAAUC________________AGG ........((((((((..((..(((...((.......)).........(((((((......))))))))))..))...)))))))).......................... (-12.88 = -13.92 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:23 2006