Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 619,975 – 620,069 |
Length | 94 |
Max. P | 0.856303 |
Location | 619,975 – 620,069 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.64 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -13.44 |
Energy contribution | -13.38 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.93 |
Structure conservation index | 0.58 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 619975 94 - 23771897 GC------UGGGAAAGCGAAGGCUG------------UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAGGCAGAAAAAAAAA-UGGAAAGAAA ((------(.....)))...(((.(------------((((.(((((((....))))))))))))))).....(((.((....))...)))...........-.......... ( -22.20) >DroSec_CAF1 31268 90 - 1 GC------UGGGAAAGCGAAGGCUG------------UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCACACAAUUGAAAGGCAAAAAAAAA-----GAAAGAAA ((------(((...(((....)))(------------((((.(((((((....)))))))))))).))......(((......)))..))).........-----........ ( -20.90) >DroEre_CAF1 33625 95 - 1 GC------UGGGAAAGCGAAGGCUG------------CUGCAUUAGCAUACAAGUGUUGGGCAGUGCCGCAAAGUCGCACAAUUGAAAGGCAAAAAAGGAAAGAAGAAUGAGA ((------(......((((.(((.(------------((((.(((((((....)))))))))))))))......)))).(....)...)))...................... ( -23.50) >DroAna_CAF1 39902 103 - 1 AUUUACUUUGGUUAGACAAAGGCUGGCCGCAUGUUGGUUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAAGCACCAACAACAA----------C .........((((((.......))))))...(((((((.((.(((((((....)))))))...(((.(.....).)))...........)))))))))....----------. ( -25.70) >consensus GC______UGGGAAAGCGAAGGCUG____________UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAGGCAAAAAAAAAAA___GAAAGAAA ........(((...(((....))).............((((.(((((((....)))))))))))..)))....(((.((....))...)))...................... (-13.44 = -13.38 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:46 2006