Locus 2228

Sequence ID 3L_DroMel_CAF1
Location 6,166,145 – 6,166,236
Length 91
Max. P 0.995988
window3451

overview

Window 1

Location 6,166,145 – 6,166,236
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.37
Mean single sequence MFE -24.92
Consensus MFE -11.94
Energy contribution -12.12
Covariance contribution 0.17
Combinations/Pair 1.67
Mean z-score -3.03
Structure conservation index 0.48
SVM decision value 2.64
SVM RNA-class probability 0.995988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6166145 91 - 23771897
UUAUCAUCCA----UCCAUCACUCCAUCUAUCAUAUAAACGGCCGGAUAUCGCGGAACGCAGACAUUUGC-GCC--CG-GUUCCGACUGUUUGCAAUCA
..........----.....................(((((((.((((.((((.((..(((((....))))-)))--))-)))))).)))))))...... ( -22.10)
>DroVir_CAF1 20877 84 - 1
UCAUCAAUCA----UCC---A--CCAUGUAUCAUGCCAAUGUUUGG-CACUUCAAGACA----CUUAUUCAGCUUGAA-GUUCCGACAAUUGGCAAUCA
..........----...---.--..........(((((((..((((-.((((((((.(.----........)))))))-)).))))..))))))).... ( -23.40)
>DroSim_CAF1 5802 91 - 1
UUAUCAUCCA----UCCAUCACUCCAUCUAUCAUAUAAACGGCCGGACAUCGCGGAGUGCAGCCAUUUGA-GCC--CG-GUUCCGGCUGUUUGCAAUCA
..........----.....................((((((((((((.((((.((....(((....))).-.))--))-))))))))))))))...... ( -25.30)
>DroEre_CAF1 5922 91 - 1
UUAUCAUCCA----UCCAUCACUCCAUCUAUCAUAUAAACGGCUGGACAUCGCGGUACGCAGCCAUUUGC-GCC--CG-GUUCCGGCUGUUUGCAAUCA
..........----.....................((((((((((((.((((.((..(((((....))))-)))--))-))))))))))))))...... ( -26.90)
>DroYak_CAF1 5868 91 - 1
UUAUCAUCCA----UCCAUCACUCCAUCUAUCAUAUAAACGGCUGGGCAUCGCGGCACGCAGCCAUUUGC-GCC--CG-GUUCCGGCUGUUUGCAAUCA
..........----.....................((((((((((((.((((.(((..((((....))))-)))--))-))))))))))))))...... ( -27.40)
>DroPer_CAF1 7944 92 - 1
UUAUCAUCCAUCCAUCCAUCACUCCAUCUAUCAUAUGAACUGGCGGACACCUCGGAUGG----CUUUUUC-GAC--GGUGUCCUCACGGUUUGCAAUCA
....................................(((((((.((((((((((((...----....)))-)).--))))))).).))))))....... ( -24.40)
>consensus
UUAUCAUCCA____UCCAUCACUCCAUCUAUCAUAUAAACGGCCGGACAUCGCGGAACGCAGCCAUUUGC_GCC__CG_GUUCCGACUGUUUGCAAUCA
...................................((((((((((((...((......((((....))))......))...))))))))))))...... (-11.94 = -12.12 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:21 2006