| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,157,682 – 6,157,802 |
| Length | 120 |
| Max. P | 0.663379 |
| Location | 6,157,682 – 6,157,802 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.33 |
| Mean single sequence MFE | -45.59 |
| Consensus MFE | -33.01 |
| Energy contribution | -32.52 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6157682 120 + 23771897 GUUUCAUGUGGAAGCUGAGCAGCACGGGCCGGGCAAAGGACUUGUUGCAGCCCUCGUAGGUGCACGGAUGCAUAGCCGAUGUCUCCGUGUGGGCGUGCUCCACAUGGACGCGCAGUCCAU .....(((((((.((...((((((.((.((.......)).)))))))).((((........(((((((.((((.....)))).)))))))))))..)))))))))((((.....)))).. ( -49.50) >DroGri_CAF1 6744 120 + 1 UUUUCAUAUGGAACGUGAGUAAGACAGAUCGAGGGAAGGUCUUGUCACAUCCCUCAAACGUGCAGGCGUGCACUUCAGAGAAUUCUGAAUGGGCGUGGUCCAUAUGAAGGCGCAGACCAC ..((((((((((((....))..((((((((.......)))).)))).((((((......(((((....)))))(((((......))))).))).))).))))))))))((......)).. ( -40.90) >DroEre_CAF1 9232 120 + 1 GUUUCAUGUGGAAGCUGAGCAGCACGGGACGGGCAAAGGACUUAUUGCAGCCCUCGUAGGUGCACGGAUGCAUGGCCGAUGUCUCCGUGUGGGCGUGUUCCACAUGGACACGCAGUCCAU .....((((((((.(...((.(((((((((((((...............))))(((...(((((....)))))...))).))).))))))..))..)))))))))((((.....)))).. ( -45.76) >DroWil_CAF1 10013 120 + 1 GUUUCAUAUGGAAAUUGAGCAAAACAGGGCGGGCAAAGCUUUUGUUGCAUCCCUCAACGGUGCAUGGAUGCAUUUCCGAUGUUUCCGUGUGGGCGUGCUCUACGUGAACUCUCAGACCGU .......((((...(((((....((((((((.((...((.......))...((...((((.(((((((......))).))))..))))..)))).))))))..)).....))))).)))) ( -34.40) >DroYak_CAF1 9235 120 + 1 GUUUCAUGUGGAAGCUGAGCAGCACGGGGCGGGCAAAGGACUUGUUGCAGCCCUCGUAGGUGCACGGAUGCAUGGCCGAUGUCUCCGUGUGGGCGUGUUCCACAUGGACACGCAGUCCAU .....(((((((((((.((((.((((((((..((((........)))).)))).))).).)))(((((.((((.....)))).))))).).)))...))))))))((((.....)))).. ( -49.60) >DroAna_CAF1 9280 120 + 1 GCUUCAUGUGGAAGCUCAGCAGCACGGGCCUGGCAAACGUUUUGUUGCAUCCCUCGUAGGUGCAGGGAUGCAUGGCCGAACUCUCCGUGUGGGCAUGCUCCACAUGAACGCGUAGGCCGU ((((((((((((.((...((.(((((((((.(((((.....)))))((((((((.((....))))))))))..))))((....)))))))..))..)))))))))))).))......... ( -53.40) >consensus GUUUCAUGUGGAAGCUGAGCAGCACGGGCCGGGCAAAGGACUUGUUGCAGCCCUCGUAGGUGCACGGAUGCAUGGCCGAUGUCUCCGUGUGGGCGUGCUCCACAUGAACGCGCAGUCCAU ..((((((((((.((...((.((((((((((.((((........)))).....(((...(((((....)))))...))))))).))))))..))..))))))))))))............ (-33.01 = -32.52 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:18 2006