Locus 2224

Sequence ID 3L_DroMel_CAF1
Location 6,153,022 – 6,153,142
Length 120
Max. P 0.639270
window3446

overview

Window 6

Location 6,153,022 – 6,153,142
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -47.20
Consensus MFE -29.08
Energy contribution -29.70
Covariance contribution 0.62
Combinations/Pair 1.47
Mean z-score -1.58
Structure conservation index 0.62
SVM decision value 0.22
SVM RNA-class probability 0.639270
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6153022 120 + 23771897
AAAGCAUCCAAAGUGGUGCCAUCGGCAUGUGCUUUUUGAGCGUAGUAGCCAUCGUAGGAGCUUUGCGCCUUGUCAACCUCCUGCUGAUGCUGCAACAGUUGCAGUUGCUCGUAGGCAGCC
...(((((......)))))....(((...(((((..(((((...(((((.((((((((((.((.((.....)).)).))))))).))))))))(((.......)))))))).)))))))) ( -40.00)
>DroPse_CAF1 5015 120 + 1
AGGGCAUCGAGGCUGGUGCCAUCUGCAUGGGCCUUCUGCGCAUAGUAGCCAUCGUAAGAGGUCUGCACCUUGUCGAUCUCCUGCUGCUGCUGCAGUCUUUGCAGCUGCUCGUAGGCGGCC
((((((..((((((.((((.....)))).)))))).))).....((((((.((....)))).)))).))).((((....(((((.((.(((((((...))))))).))..))))))))). ( -51.70)
>DroGri_CAF1 896 120 + 1
AGGUCGUCGAGGUUGGCUCCCUCGGCGUUUGCCUUUUGGGCAUAGUAGCCAUCGUAGGAGCUUUGCGCCUUCUCGAUCUCCUGCUGCUGUUGCAGCUUCUGCAGCUGCUCGUAGGCGGCC
.(((((((((((.......)))))))....((((..((((((.((((((.((((.(((.((...)).)))...)))).....))))))(((((((...))))))))))))).)))))))) ( -52.30)
>DroWil_CAF1 4700 120 + 1
AGAGCAUCCAAAUUGGUGCCGUCGGCAUGAGCCUUCUGAGCAUAGUAGCCAUCGUAGGAGCUUUGAGCCUUAUCGAUUUCCUGCUGCUCUUGCAACUUUUGCAACUGCUCAUAGGCAGCA
...((........(.(((((...))))).)((((..((((((.((((((.((((((((.((.....)))))).)))).....)))))).(((((.....))))).)))))).)))).)). ( -40.00)
>DroAna_CAF1 4703 120 + 1
AAGUCGUCGAGGUUGGAGCCCUCGGCAUGAGCCUUCUGGGCGUAAUAGCCGUCGUAGGAGCUCUGCACUCGAUCGAUCUCCUGCUGAUGCUGGAGCCGAUGGAGUUGUUCGUGGGCUGCC
..............(((((((.(((((.((((.(((((((((.......)))).))))))))))))((((.((((..((((.((....)).)))).)))).))))....)).))))).)) ( -49.40)
>DroPer_CAF1 8604 120 + 1
AGGGCGUCGAGGCUGGUGCCAUCCGCGUGGGCCUUCUGCGCAUAGUAGCCAUCGUAAGAGGUCUGUACCUUGUCGAUCUCCUGCUGCUGCUGCAGUCUUUGCAGCUGCUCGUAGGCGGCC
...((((.(((((....))).)).)))).((((.((((((...(((((..((((...(((((....)))))..))))...)))))((.(((((((...))))))).)).)))))).)))) ( -49.80)
>consensus
AGGGCAUCGAGGUUGGUGCCAUCGGCAUGAGCCUUCUGAGCAUAGUAGCCAUCGUAGGAGCUCUGCACCUUGUCGAUCUCCUGCUGCUGCUGCAGCCUUUGCAGCUGCUCGUAGGCGGCC
.(.(((...(((((.((((.....)))).)))))..))).)......(((...(((((((.((...........)).))))))).((.(((((((...))))))).)).....))).... (-29.08 = -29.70 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:15 2006