| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,151,755 – 6,151,872 |
| Length | 117 |
| Max. P | 0.965808 |
| Location | 6,151,755 – 6,151,872 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.31 |
| Mean single sequence MFE | -37.73 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.965808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6151755 117 - 23771897 AGCUUACUGUGGCGAAUCUUGCCGACAAAGUGGACACUUUGUGACGCCGG---CUCGGCCGUUCUUCCUCCUCAUGCUAUCCAGGCAGUGCUGGCACACAAAAUGCCCACAUACCAUCAU .......((((((((...))))).)))..((((.((.((((((..(((((---(.(.(((.......................))).).)))))).)))))).)).)))).......... ( -36.70) >DroVir_CAF1 3717 117 - 1 AACUUACUGUGGCGAAUUUUGCCGACACAGUGGACACUUGGUUACGCUAC---CAAGACUUAACUUCCUCUUCAUGGUGUCCAGACAAUGUUGGCAGAGAAAGUGGCCACAGGACAGCAU ......(((((((.(.(((((((((((...((((((((((((......))---)))).........((.......)))))))).....)))))))))))....).)))))))........ ( -43.40) >DroEre_CAF1 3207 117 - 1 ACAUUACUGUGGCGAGUCCUGUCGACAAAGUGGACACGUUGUGACGCUAG---CUCGGCCGCUCUUUCUCCUCAUGGUAUCCAGGCAGUGCUGGCACACAAAAUGUCCACAUACCAUCAU ........((((...(((.....)))...(((((((..(((((..(((((---(.(.(((.........((....))......))).).)))))).)))))..)))))))...))))... ( -40.36) >DroWil_CAF1 3104 117 - 1 UACAUACUGUGGUGAAUCCUGCCGACAUAAUGGACACUUGGUAACCCCUU---CACGUGACGUCUUCUUGCGCAUGUUAUCCAAACAGUGUUGGCACACAAAGUGGCCACAAACCAUCAU .......((((((......(((((((((..((((.....((.....))..---.(((((.(((......))))))))..))))....)))))))))(((...)))))))))......... ( -31.40) >DroYak_CAF1 3181 120 - 1 ACCUUACUGUGGCGAAUCCUGCCGACAAAGUGGACACUUUGUGACGUCAGACACUCGACCGCUUUUCCUCCUCAUGCUAUCCAGGCAGUGCUGACACACAAAGUGCCCACAUACCAUCAU .......(((((((.....)))).)))..((((.(((((((((..(((((.((((.(.((.......................)))))))))))).))))))))).)))).......... ( -38.30) >DroAna_CAF1 3185 114 - 1 AUCUUACUGCGGAGAGUCCUGUCGACAUAUGGGACACUUGGAGAUGCCAU---GUAGAGUGCUUUU---CUUCAUGUUCUCCAGACAAAGUUGGCACACGAAGUGACCGCAGACCAUCAU ......((((((...(((((((......)))))))..(((((((...(((---(.((((.....))---)).)))).))))))).((...(((.....)))..)).))))))........ ( -36.20) >consensus AACUUACUGUGGCGAAUCCUGCCGACAAAGUGGACACUUGGUGACGCCAG___CUCGACCGCUCUUCCUCCUCAUGCUAUCCAGACAGUGCUGGCACACAAAGUGCCCACAUACCAUCAU .......(((((((.....))))).))..((((.(((((.(((..((((.......((.............)).((((.....))))....)))).))).))))).)))).......... (-15.47 = -15.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:14 2006