Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,139,918 – 6,140,029 |
Length | 111 |
Max. P | 0.631058 |
Location | 6,139,918 – 6,140,029 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.52 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -5.45 |
Energy contribution | -8.05 |
Covariance contribution | 2.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.23 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6139918 111 - 23771897 CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGCCGUGUUGCAAGAGCGCACUUAGGUGGCGUAUGAGUAAUUUAUGCGAAAUCUCACCUACUUUACGUAGC .................((((((...(((.((.((((((((((((((((.....)))))((....))))))))))))).)).)))..))))))....((((.....)))). ( -30.40) >DroSec_CAF1 44653 95 - 1 CACUCUCAGUACGAUAUGGUUUCAAUGAACAUCACUCAUACGACCUGUUGCAACAG-------------CGUAUGAGUAAUUUAUGCGAAAGCUCACCAACAUUACG---C ........(((.....((((.............(((((((((..((((....))))-------------))))))))).......((....))..))))....))).---. ( -22.80) >DroSim_CAF1 46078 95 - 1 CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGACCUGUUGCAACAG-------------CGUAUGAGUAAUUUAUGCGAAGGCUCACCAACAUUACG---C ........(((.....((((......(((.((.(((((((((..((((....))))-------------))))))))).)).)))((....))..))))....))).---. ( -22.00) >DroEre_CAF1 48196 111 - 1 CACUCUCAGUAUGAUAUGGUUUCAAUGUGCAUCACUCAUACGCCGUGUUACAACCGCGCACUUUAAUGGGGUAUGAGUAAUUUUGGCGAAAGCUCACCUAAUUUUCAUACC ........((((((...(((.............((((((((.((((...................)))).))))))))......(((....))).)))......)))))). ( -28.51) >DroYak_CAF1 53553 95 - 1 CACUCUCAGUAUGAUAUGGUUUCAAUGUGCAUCACUCAUACGCCGUGUGGCAACACCGCACUUAA--------------AUUUUUGCAAAAA--CACCUACUUUACGUAGU ........((((((....((........)).....))))))...((((((.....))))))....--------------.............--...((((.....)))). ( -17.00) >consensus CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGCCGUGUUGCAACAGCGCACUU______CGUAUGAGUAAUUUAUGCGAAAGCUCACCUACUUUACGUA_C .................(((.............(((((((((...........................))))))))).......((....))..)))............. ( -5.45 = -8.05 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:12 2006