| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,126,855 – 6,126,963 |
| Length | 108 |
| Max. P | 0.732994 |
| Location | 6,126,855 – 6,126,963 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.35 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -22.62 |
| Energy contribution | -23.65 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6126855 108 + 23771897 UUUUUGUGCUGUUU--UUCAAU-UGCCAGCGUUGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAGCGGUGUACUCAUCCGAAAGGUA ..............--......-...((.((((((((.((((((((.(((((..((......))..)).)))...)))))))))))))))).)).......((....)).. ( -33.40) >DroPse_CAF1 37539 98 + 1 -----------UUU--UUCAAUUUACCAAAGAUGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAUCGAUGUACUCGGCUGAAAGGUA -----------...--.......((((...(((((((.((((((((.(((((..((......))..)).)))...)))))))))))))))((.....))........)))) ( -28.60) >DroEre_CAF1 33465 106 + 1 --UUUGUGCUGUUU--UUCAAU-UGCCAGCAUUGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAGCGAUGUACUCAUCCGAAAGGUA --...((((((...--......-...))))))(((((.((((((((.(((((..((......))..)).)))...)))))))))))))((((((....))))(....))). ( -29.90) >DroYak_CAF1 40368 106 + 1 --UUUGUACUGUUU--UUCAAU-UGCCAGCAUAGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAGCGGUGUACUCAUCCGAAAGGUA --...((((((...--..))..-.(((.((...((((.((((((((.(((((..((......))..)).)))...)))))))))))).)))))))))....((....)).. ( -29.20) >DroAna_CAF1 46162 99 + 1 --UUUGCCACGUUUUUUGCAAU-UGGCAGAGAUGCACCAAA---------GUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAUCGGCGUACUCAUCCAAAAGGUA --...(((......(((((...-..)))))(((((((.(((---------((((((..................))))))))))))))))))).................. ( -33.07) >DroPer_CAF1 38102 98 + 1 -----------UUU--UUCAAUUUACCAAAGAUGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAUCGAUGUACUCGGCUGAAAGGUA -----------...--.......((((...(((((((.((((((((.(((((..((......))..)).)))...)))))))))))))))((.....))........)))) ( -28.60) >consensus __UUUGU_CUGUUU__UUCAAU_UGCCAGAGAUGCACCAAAGUCGCCAAAGUCGCUGCGACAAGUAACAUUUAAAGCGGCUUUGUGCAGCGAUGUACUCAUCCGAAAGGUA .......................((((...(((((((.((((((((....((..((......))..)).......)))))))))))))))((((....)))).....)))) (-22.62 = -23.65 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:09 2006