Locus 2217

Sequence ID 3L_DroMel_CAF1
Location 6,112,663 – 6,112,766
Length 103
Max. P 0.900153
window3437

overview

Window 7

Location 6,112,663 – 6,112,766
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -23.27
Consensus MFE -16.12
Energy contribution -16.45
Covariance contribution 0.33
Combinations/Pair 1.05
Mean z-score -2.29
Structure conservation index 0.69
SVM decision value 1.01
SVM RNA-class probability 0.900153
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6112663 103 - 23771897
AAUUUCAGGCGUUGAUUUAAAUUUCAUGCGAUGCUAAUGAAAUUUGGAAGAUACCUUCCAA-------AAAC-AACAUA--CAGCGCACAG---AGAG----CCAAACGGCCAAAUUAAU
..((((..((((((....(((((((((.........)))))))))(((((....)))))..-------....-......--))))))...)---)))(----((....)))......... ( -27.30)
>DroPse_CAF1 25477 113 - 1
AAUUUCUGGCGCUGAUUUAAAUUUCAUGCGGUGCUAAUGAAAUUUGGAAGAUGCCAGCCAG-------AAAUACACACACAAAGCACACACCACACAGUUCAACCAACAAUCGCAUUAAU
.(((((((((((...((((((((((((.........))))))))))))....))..)))))-------))))................................................ ( -22.70)
>DroEre_CAF1 21916 104 - 1
AAUUUCAGGCGUUGAUUUAAAUUUCAUGCGAUGCUAAUGAAAUUUGGAAGAUGCCUUCCAA-------AAACUAACAUA--CAGCACACAG---AGAG----CCAAGCAGCCAAAUUAAU
.......(((((((....(((((((((.........)))))))))(((((....)))))..-------...........--))))......---...(----(...)).)))........ ( -21.70)
>DroYak_CAF1 21370 106 - 1
AAUUUCAGGCGUUGAUUUAAAUUUCAUGCGAUGCUAAUGAAAUUUGGAAGAUGCCUUCCAA-------AAACUAACAUACACAGCACACAG---AGAG----CCAAACGUCGAAAUUAAU
((((((.((((((........((((.((.(.((((.(((...((((((((....)))))))-------)......)))....))))).)))---))).----...))))))))))))... ( -24.10)
>DroAna_CAF1 26275 108 - 1
AAUUUCUGGCGUUGAUUUAAAUUUCAUGCGAUGCUAAUGAAAUUUGGAAGAUGCCUGCUAAGAAAAUAAAAC-AACAU----AGCACACAC---AUAG----CCAAAGAGCCAUAUUAAU
...((((((((((..((((((((((((.........)))))))))))).))))))(((((.(..........-..).)----)))).....---....----....)))).......... ( -21.10)
>DroPer_CAF1 26037 113 - 1
AAUUUCUGGCGCUGAUUUAAAUUUCAUGCGGUGCUAAUGAAAUUUGGAAGAUGCCAGCCAG-------AAAUACACACACAAAGCACACACCACACAGUCCAACCAACAAUCGCAUUAAU
.(((((((((((...((((((((((((.........))))))))))))....))..)))))-------))))................................................ ( -22.70)
>consensus
AAUUUCAGGCGUUGAUUUAAAUUUCAUGCGAUGCUAAUGAAAUUUGGAAGAUGCCUGCCAA_______AAAC_AACAUA__CAGCACACAC___AGAG____CCAAACAGCCAAAUUAAU
......(((((((..((((((((((((.........)))))))))))).)))))))................................................................ (-16.12 = -16.45 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:06 2006