Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,107,057 – 6,107,153 |
Length | 96 |
Max. P | 0.829118 |
Location | 6,107,057 – 6,107,153 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -23.34 |
Energy contribution | -22.35 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.35 |
Mean z-score | -1.44 |
Structure conservation index | 0.82 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6107057 96 - 23771897 AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCCGUGGCCUAAGUGAAAUUGCUUUGACCUUUAGCAAUUUUAAAGCCAU--ACUAUC ..(((((......(((....)))((......)))))))......(((((.....((((((((((.........))))))))))..)))))--...... ( -26.10) >DroSim_CAF1 15111 96 - 1 AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGUGGCCUAAGUAAAAUUGAUUUGGCCUUUAGCAAUUUUAAAGCCAC--ACUAUC ..(((((......(((....)))((......))))))).....((((((.....((((((((.............))))))))..)))))--)..... ( -23.12) >DroEre_CAF1 18361 89 - 1 AGAACGGAUUCCAGCCCCAGGGCGCUCAUCUGCCCGUUGCCCCCCAGGCCUAAGUGAGAUUGCUUA-------AGCAGUUUUAGAGCCAU--ACAAUC ..(((((......(((....)))((......)))))))........(((((((....((((((...-------.)))))))))).)))..--...... ( -25.90) >DroYak_CAF1 15585 96 - 1 AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGAGGCCUAAGUGAAAUUGUUCACAAUUCGAGCAGUUUUAUAGCCAU--ACAAUC .....((......(((.(((((.((.............))))))).)))....((((((((((((.......))))))))))))..))..--...... ( -29.52) >DroAna_CAF1 21531 98 - 1 AGAACGGAUUCCAGCCCCAGGGUGCCCAUCUGCCCGUUGCCCCUGAGGCCUAAGCUGAGUUGCUUUUGAGUGAAGCAGCUUUAAUGCCAAGUCCUACC .....(((((...(((.(((((.((.............))))))).)))....((.((((((((((.....))))))))))....))..))))).... ( -32.92) >DroPer_CAF1 20516 91 - 1 AGAACGGUUUCCAGCCCUCGGGCGCUCAUCUGCCCGUGGCCCCUGAGGCUUAAGUUGAGUUGCUUCCUUCGCAAGCAGCUUGAAAGCCAU-------C .............(((..((((((......)))))).)))......(((((...(..((((((((.......))))))))..))))))..-------. ( -33.30) >consensus AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGAGGCCUAAGUGAAAUUGCUUUCAACUCAAGCAGUUUUAAAGCCAU__ACUAUC ..(((((......(((....)))((......)))))))........(((.....((((((((((.........))))))))))..))).......... (-23.34 = -22.35 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:05 2006