Locus 2215

Sequence ID 3L_DroMel_CAF1
Location 6,106,375 – 6,106,478
Length 103
Max. P 0.910541
window3435

overview

Window 5

Location 6,106,375 – 6,106,478
Length 103
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 84.06
Mean single sequence MFE -20.15
Consensus MFE -15.09
Energy contribution -15.77
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.75
SVM decision value 1.07
SVM RNA-class probability 0.910541
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6106375 103 + 23771897
UAAUUAAGCUAAUCGUGAACAUGUUUGUUUGAAACAAACAGAUAGAACGGUGAAAAUUUGUAUAAAAAACAGUACACGAUCACCAUUUGCUAUA----UACAUAUAA---------
......(((.....((.....((((((((((...))))))))))..))(((((.....(((((........)))))...)))))....)))...----.........--------- ( -19.90)
>DroSec_CAF1 14900 112 + 1
UAAUUAAGCUAAUCGUGAACAUGUUUGUUUGAAACAAACAGAUAGAAUGGUGAAAAUUUGUAUACAAAACAGUGAAUGAUCACCAUUUGCUAUA----UACAUAUAAAACAUAAAC
......(((............((((((((((...))))))))))(((((((((..(((..(..........)..)))..))))))))))))...----.................. ( -22.70)
>DroSim_CAF1 14446 112 + 1
UAAUUAAGCUAAUCGUGAACAUGUUUGUUUGAAACAAACAGAUAGAAUGGUGAAAAUUUGUAUACAAAACAGUGAAUGAUCACCAUUUGCUAUA----UACAUAUAAAACAUAAAC
......(((............((((((((((...))))))))))(((((((((..(((..(..........)..)))..))))))))))))...----.................. ( -22.70)
>DroEre_CAF1 17725 116 + 1
CAAUUAAGCUAAUCGUGAACAUUUUUGUUUGAAAUAAACAGAUAGAAUAGUGAAUAUUUGUAUGAGAAACGGUAGAUGAUCACAUAUCAACAUAUAACUACAUAUAAAACAAAAUU
.......((((.(((....)...((((((((...))))))))..)).)))).....((((((((((.....((.((((......)))).))......)).))))))))........ ( -15.30)
>consensus
UAAUUAAGCUAAUCGUGAACAUGUUUGUUUGAAACAAACAGAUAGAAUGGUGAAAAUUUGUAUAAAAAACAGUAAAUGAUCACCAUUUGCUAUA____UACAUAUAAAACAUAAAC
..............(((....((((((((((...))))))))))(((((((((....((((.......)))).......)))))))))............)))............. (-15.09 = -15.77 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:05 2006