Locus 2214

Sequence ID 3L_DroMel_CAF1
Location 6,103,540 – 6,103,632
Length 92
Max. P 0.983766
window3434

overview

Window 4

Location 6,103,540 – 6,103,632
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 88.12
Mean single sequence MFE -21.35
Consensus MFE -19.26
Energy contribution -18.82
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -2.34
Structure conservation index 0.90
SVM decision value 1.95
SVM RNA-class probability 0.983766
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6103540 92 + 23771897
CAAUUGUAAUUGAAAUAUUGCUGUCAAGUUCGGCAAUGACUGAUGUUGUAUGCUAAAAUUUGCAUAUUAAUUGCUAUAACAGUUGUCUUUCA
(((((((........((((((((.......))))))))...(((...((((((........))))))..)))......)))))))....... ( -20.60)
>DroPse_CAF1 16430 92 + 1
CAAUUGUAAUUGAAAUAUUGCUAUCAAGUUUGGCAAUGACUGAUGAUGUGUGCACAAAUUUGCAUAUUAAUUGCAAUAACUGUUGCUUUUCA
..(((((((((((..((((((((.......))))))))..........((((((......)))))))))))))))))............... ( -21.80)
>DroEre_CAF1 14690 89 + 1
CAAUUAUAAUUGAAAUAUUGCUGUCAA--UCGGCAAUGACUGAUGUUGUAUGCUAAGAUUAGCAUAUUAAUUGCAAAAGCAGUUGU-UUUCA
..........(((((((((((((....--.)))))))).........((((((((....))))))))(((((((....))))))).-))))) ( -22.60)
>DroYak_CAF1 12243 92 + 1
CAAUUGUAAUUGAAAUAUUGCUGUCAAGUUCGGCGAUGACUGAUGUUCUAUGCUAAUAUUUGCAUAUUAAUUGCAAAAACUGUUGUCUUUCA
...((((((((((..((((((((.......))))))))..........(((((........)))))))))))))))................ ( -20.70)
>DroAna_CAF1 16750 91 + 1
CACUUGCAAUUGAAAUAUUGCUGUCAAGUUCGGCAAUGACGGAUGUUCUAUGC-AAAAUUUGCAUAUAAAUUGCAAUAACUUUUGCCUUUCA
...((((((((....((((((((.......))))))))..........(((((-(.....))))))..))))))))................ ( -20.60)
>DroPer_CAF1 16849 92 + 1
CAAUUGUAAUUGAAAUAUUGCUAUCAAGUUUGGCAAUGACUGAUGAUGUGUGCACAAAUUUGCAUAUUAAUUGCAAUAACUGUUGCUUUUCA
..(((((((((((..((((((((.......))))))))..........((((((......)))))))))))))))))............... ( -21.80)
>consensus
CAAUUGUAAUUGAAAUAUUGCUGUCAAGUUCGGCAAUGACUGAUGUUGUAUGCUAAAAUUUGCAUAUUAAUUGCAAUAACUGUUGCCUUUCA
...((((((((((..((((((((.......))))))))..........(((((........)))))))))))))))................ (-19.26 = -18.82 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:04 2006