Locus 2213

Sequence ID 3L_DroMel_CAF1
Location 6,096,337 – 6,096,430
Length 93
Max. P 0.824632
window3433

overview

Window 3

Location 6,096,337 – 6,096,430
Length 93
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.65
Mean single sequence MFE -39.18
Consensus MFE -29.30
Energy contribution -29.42
Covariance contribution 0.11
Combinations/Pair 1.19
Mean z-score -1.41
Structure conservation index 0.75
SVM decision value 0.69
SVM RNA-class probability 0.824632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6096337 93 - 23771897
CCGCCAAUUGUCCCAAAUCCGGCACUGGCAUGAGCCGGUGUCGCCGUCAACGUGGCCGUGGCAAUAUUGAGGUUGUUGCUCACA-------CUGGACGA-C-----------
.......((((((.......(((((((((....)))))))))((((......)))).(((((((((.......)))))).))).-------..))))))-.----------- ( -37.10)
>DroPse_CAF1 8556 102 - 1
CCCCCGAUGGCCCCGAACCCGGCACUGGUAUGGGCCGGGGCCGCCGUCAAGGUGGCCGUGGCUAUAUUCAAAUUAUUGCUUACA-------CUGGUCGCACCCCCGGCU---
........(((((((..((((((....)).)))).)))))))((((.....(((((((((((.(((.......))).))...))-------).)))))).....)))).--- ( -41.40)
>DroSec_CAF1 5005 93 - 1
CCGCCAAUUGUCCCAAAUCCGGCACUGGCAUGAGCCGGUGUCGCCGUCAAUGUGGCCGUGGCAAUAUUGAGGUUGUUGCUCACA-------CUGGACGA-C-----------
.......((((((.......(((((((((....)))))))))((((......)))).(((((((((.......)))))).))).-------..))))))-.----------- ( -37.10)
>DroYak_CAF1 5282 93 - 1
CCGCCAAUUGUCCCAAAUCCGGCACUUGCAUGCGCCGGUGUCGCCGUCAAGGUGGCCGUGGCAAUAUUGAGGUUGUUGCUCACA-------CUGGACGA-C-----------
.......((((((.....(((((.(......).))))).((((((.....)))))).(((((((((.......)))))).))).-------..))))))-.----------- ( -35.20)
>DroAna_CAF1 8250 111 - 1
CCGCCAAGGGUGCCGAAUCCUGCACUGGUAUGAGCCGGUGCCGCCGUCAAGGUGGCCGUGGCAAUAUUAAGGUUGUUGCUCACCGAGGUUCCUGCACCA-CUUCCGCCUCCA
..((.((((((((.(((.(((.(((((((....))))))((((((.....)))))).(((((((((.......)))))).))).)))))))..))))).-)))..))..... ( -42.30)
>DroPer_CAF1 8634 102 - 1
CCCCCGAUGGCCCCGAACCCGGCACUGGUAUGGGCCGGGGCCGCCGUCAAGGUGGCCGUGGCUAUAUUCAGAUUAUUGCUUACA-------CUGGUCGCACCCCCGGCU---
...(((((((((.((..((((((.((.....))))))))((((((.....)))))))).)))))).....(((((.((....))-------.))))).......)))..--- ( -42.00)
>consensus
CCGCCAAUGGUCCCAAAUCCGGCACUGGCAUGAGCCGGUGCCGCCGUCAAGGUGGCCGUGGCAAUAUUGAGGUUGUUGCUCACA_______CUGGACGA_C___________
.........((((.......(((((((((....)))))))))((((......)))).(((((((((.......)))))).)))..........))))............... (-29.30 = -29.42 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:03 2006