Locus 2212

Sequence ID 3L_DroMel_CAF1
Location 6,094,565 – 6,094,668
Length 103
Max. P 0.613327
window3432

overview

Window 2

Location 6,094,565 – 6,094,668
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 83.35
Mean single sequence MFE -22.95
Consensus MFE -15.58
Energy contribution -15.08
Covariance contribution -0.50
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.613327
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6094565 103 - 23771897
AAGCAAACAUUUCAAUGCAUCAAUGUAAAUUGGCAUAAUGCGUGCAGUUGGGUUCUUUCUCUCUUAUUUUUCCAUUUUGCACCGUCCAUAAAUUAUGCCAAUU
..(((..........))).........((((((((((((((((((((.((((..................))))..))))).)))......)))))))))))) ( -23.47)
>DroPse_CAF1 7161 102 - 1
-GGCAAACAUUUCAAUGCAUCAAUGCAAAUUGGCAUAAUGCGUGCAGUUCUGCUCGUUCGCUUUUUGUCUCUGUCUCUGCUCUGGGCAUAAAUUAUGCCAAUU
-..............((((....))))(((((((((((((((.(((....))).)))........(((((..((....))...)))))...)))))))))))) ( -26.00)
>DroEre_CAF1 6083 103 - 1
AAGCAAACAUUUCAAUGCAUCAAUGUAAAUUGGCAUAAUGCGUGCAGUUGAGUUCUUUCUCCCUUAUUUUUUCAUUUUGCACCGUCCAUAAAUUAUGCCAAUU
..(((..........))).........((((((((((((((((((((.((((..................))))..))))).)))......)))))))))))) ( -21.67)
>DroYak_CAF1 3337 103 - 1
AAGCAAACAUUUCAAUGCAUCAAUGUAAAUUGGCAUAAUGCGUGCAGUUGAGUUCAUUCUCUCUUAUUUUGCCAUUUUGCACCGUCCAUAAAUUAUGCCAAUU
..(((..........))).........((((((((((((((((((((..(((......)))...............))))).)))......)))))))))))) ( -20.53)
>DroAna_CAF1 6459 93 - 1
GAGCAAACAUUUCAAUGCAUCAAUGCAAAUUGGCAUAAUGCGUGCAGUGGAGCCCC-UCCCUCUU---------UUUUGUCUCGUCCAUAAAUUAUGCCAAUU
...............((((....))))(((((((((((((((.((((.((((....-...)))).---------..))))..)))......)))))))))))) ( -22.20)
>DroPer_CAF1 7238 102 - 1
-GGCAAACAUUUCAAUGCAUCAAUGCAAAUUGGCAUAAUGCGUGCAGUUCUGUUCGUUCGCUUUUUGUCUCUGUCUCUGCUCUGGGCAUAAAUUAUGCCAAUU
-..............((((....))))(((((((((((((((.(((....))).....)))....(((((..((....))...)))))...)))))))))))) ( -23.80)
>consensus
AAGCAAACAUUUCAAUGCAUCAAUGCAAAUUGGCAUAAUGCGUGCAGUUGAGUUCGUUCUCUCUUAUUUUCUCAUUUUGCACCGUCCAUAAAUUAUGCCAAUU
...............((((....))))(((((((((((((((.((((.............................))))..)))......)))))))))))) (-15.58 = -15.08 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:02 2006