Locus 2211

Sequence ID 3L_DroMel_CAF1
Location 6,094,194 – 6,094,302
Length 108
Max. P 0.958201
window3431

overview

Window 1

Location 6,094,194 – 6,094,302
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 89.47
Mean single sequence MFE -36.07
Consensus MFE -29.83
Energy contribution -29.20
Covariance contribution -0.63
Combinations/Pair 1.18
Mean z-score -2.38
Structure conservation index 0.83
SVM decision value 1.49
SVM RNA-class probability 0.958201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6094194 108 - 23771897
GAAGCAUUAAAGCACUUGUCCUUGCUCUACGCUUGUGUGGGUGCAUUGGGUGUCUUUUGUGGGUAUGUGUGUGUGUGUGAGUGCGAAGGAUACCCGAGCUGAGUGUUA
..((((((...(((((..(.(..((.....))..).)..))))).((((((((((((((((..((..(......)..))..))))))))))))))))....)))))). ( -39.40)
>DroSec_CAF1 2856 105 - 1
GAAGCAUUAAAGCACUUGUCCUUGCUCUGCGCUUGUGUGGGUGCAUUGGGUGUCUUGUGUGGGUAUAUG-G--UGUGUGUGUGCAAAGGAUACCCGAGCUGAGUGUUA
..........(((((((......(((((((((((....)))))))..(((((((((.((((..(((((.-.--.)))))..)))).))))))))))))).))))))). ( -37.20)
>DroSim_CAF1 2757 106 - 1
GAAGCAUUAAAGCACUUGUCCUUGCUCUGCGCUUGUGUGGGUGCAUUGGGUGUCUUGUGUGGGUAUAUGUG--UGUCUGUGUGCAAAGGAUACCCGAGCUGAGUGUUA
..........(((((((......(((((((((((....)))))))..(((((((((......((((((...--.....))))))..))))))))))))).))))))). ( -36.30)
>DroYak_CAF1 2960 106 - 1
GAAGCAUUAAAGCACUUGUCCUUGCUGUGCUCUUGUGUAUGUGCAUUGGCUGUCUUGUGUGUUUGUG--CGUGUGUGUGGGUGUGAAGGAUACCCGAGCUGAGUGUUA
..((((((..((((........))))..((((..(..((..(((((..((..........))..)))--))..))..)((((((.....))))))))))..)))))). ( -31.40)
>consensus
GAAGCAUUAAAGCACUUGUCCUUGCUCUGCGCUUGUGUGGGUGCAUUGGGUGUCUUGUGUGGGUAUAUGUG__UGUGUGUGUGCAAAGGAUACCCGAGCUGAGUGUUA
..((((((..(((.........(((((((((....)))))).)))(((((((((((.((((..(((((......)))))..)))).)))))))))))))).)))))). (-29.83 = -29.20 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:01 2006