| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,089,954 – 6,090,068 |
| Length | 114 |
| Max. P | 0.579097 |
| Location | 6,089,954 – 6,090,068 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.53 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -28.27 |
| Energy contribution | -28.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6089954 114 + 23771897 UGGAAAUCACAAAAGCAUAAAGAUGCAGGUGCCGCGAUUAGUUUACCCCGAUUUUCCGCGAUUUCCCGCGACUGCCACGCGGCCACUGUGCUCCAACCCCC---A---AAAAAACGAAAA ((((...(((....((((....)))).(((((((((..((((.......(.....)((((......))))))))...))))).))))))).))))......---.---............ ( -28.60) >DroSec_CAF1 38319 117 + 1 UGGAAAUCACAAAAGCAUAAAGAUGCAGGUGCCGCGAUUAGUUUACCCCGAUUUUCCGCGUUUUCCCGCGACUGCCACGCGGCCACUGUGCUCCAACCCC---AAAAAAAAAAACGAAAA ((((...(((....((((....)))).(((((((((..((((.......(.....)((((......))))))))...))))).))))))).)))).....---................. ( -28.10) >DroSim_CAF1 39634 120 + 1 UGGAAAUCACAAAAGCAUAAAGAUGCAGGUGCCGCGAUUAGUUUACCCCGAUUUUCCGCGUUUUCCCGCGACUGCCACGCGGCCACUGUGCUCCAACCCCCCAAAAAAAAAAAACGAAAA ((((...(((....((((....)))).(((((((((..((((.......(.....)((((......))))))))...))))).))))))).))))......................... ( -28.10) >consensus UGGAAAUCACAAAAGCAUAAAGAUGCAGGUGCCGCGAUUAGUUUACCCCGAUUUUCCGCGUUUUCCCGCGACUGCCACGCGGCCACUGUGCUCCAACCCCC__AAAAAAAAAAACGAAAA ((((...(((....((((....)))).(((((((((..((((.......(.....)((((......))))))))...))))).))))))).))))......................... (-28.27 = -28.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:52 2006