Locus 2202

Sequence ID 3L_DroMel_CAF1
Location 6,065,599 – 6,065,699
Length 100
Max. P 0.943774
window3408

overview

Window 8

Location 6,065,599 – 6,065,699
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 93.17
Mean single sequence MFE -21.08
Consensus MFE -17.48
Energy contribution -18.68
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 1.34
SVM RNA-class probability 0.943774
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6065599 100 - 23771897
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUAAGAACUCGGCUGAUUAAAUUAGUUUGUUUUCUCUUCGAUUCGUUUUGUUUGUAGUUUUU
(((((((.((((....))))((((((((((....(((((..((((..((((((((...))))).)))..))))..))))))))))))))))))))))... ( -22.60)
>DroSec_CAF1 14446 100 - 1
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUUAGAACUCGGCUGAAUAAAUUAGUUUGUUUUCUCUUCGAUUCGUUUUGCUUGUAGUUUUU
(((((((...((((((....))))))(((((..((((((..((((..(((((((.....)))).)))..))))..))))))...))))).)))))))... ( -22.00)
>DroSim_CAF1 14958 100 - 1
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUUAGAACUCGGCUGAAUAAAUUAGUUUGUUUUCUCUUCGAUUCGUUUUGUUUGUAGUUUUU
(((((((.((((....))))((((((((((....(((((..((((..(((((((.....)))).)))..))))..))))))))))))))))))))))... ( -22.20)
>DroEre_CAF1 13907 96 - 1
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUAAGAACUCGGCUGAAUAAAUUAGUU----UUCGUUUCUUUUCGUUUUGUUUGUAGUUUUC
((((......((((((....))))))(((((((((.(((.(((((..(((((((.....))))).----..)).))))).))).)))))))))))))... ( -18.70)
>DroYak_CAF1 15334 95 - 1
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUAAGAACUCGGCUGAAUAAAUUAGUU-----UCUUUUCGUUUCGUUUUGUUUGUAGUUUUC
(((((((.((((....))))(((((((((((.....(((.(((((....(((((.....))))))-----)))).))).))))))))))))))))))... ( -19.90)
>consensus
AGCUAUACAAUUUGUUAGUUAACAAAGCGAAUAAGUUGAUAAGAACUCGGCUGAAUAAAUUAGUUUGUUUUCUCUUCGAUUCGUUUUGUUUGUAGUUUUU
(((((((.((((....))))(((((((((((....((((..((((...((((((.....))))))....))))..))))))))))))))))))))))... (-17.48 = -18.68 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:39 2006