| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,058,442 – 6,058,536 |
| Length | 94 |
| Max. P | 0.979811 |
| Location | 6,058,442 – 6,058,536 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 84.67 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6058442 94 + 23771897 AAA-AAAUGUGCAGCUUUGUCAAAUAGCAAAGAA---CGCGGUGCAGCAGCGAAUAGUUUCGUUCCACUCGGAGAAAAUAGCACCCACUCUUCAAAAU ...-....(((...((((((......))))))..---)))(((((....(((((....)))))(((....))).......)))))............. ( -22.80) >DroSec_CAF1 7389 93 + 1 AA--AAAUGUGCAGCUUUGUCAAAUAGCAAAGAG---CGCGGUGCAGCAGCGAAUAGUUUCGCUCCACUCGGAGAAAAUAGCAACCAUUUUUCAAAAU ((--((((((((..((((((......)))))).)---)))(((((....(((((....)))))(((....))).......)).)))))))))...... ( -24.90) >DroEre_CAF1 7609 92 + 1 AAA-AAAUGUGCAGCUUUGCCAAACAGCAAGGAGCAGCGCGGUGC---AGCGAAUAGUUUCGCUCCACGCGGAAAAAAUCGCAUCAA--UUUCGAAAC ...-....((((.(((((((......)))..)))).))))(((((---.(((((....)))))(((....))).......)))))..--......... ( -27.80) >DroYak_CAF1 7534 93 + 1 AAAAAAAUGUGCAGCUUUGCCAAAUAGCAAAGAG---CGCGGUGCAGCAGCGAAUAGUUUCGCUCCACGCGGAAAAAAUCGCUUUAG--UUUCAAAAU ........((((..((((((......)))))).)---)))((.((...(((((....((((((.....))))))....)))))...)--).))..... ( -26.50) >consensus AAA_AAAUGUGCAGCUUUGCCAAAUAGCAAAGAG___CGCGGUGCAGCAGCGAAUAGUUUCGCUCCACGCGGAAAAAAUAGCAUCAA__UUUCAAAAU ........(((...((((((......)))))).....)))(((((....(((((....)))))(((....))).......)))))............. (-20.64 = -20.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:38 2006