Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 613,450 – 613,557 |
Length | 107 |
Max. P | 0.999993 |
Location | 613,450 – 613,557 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -27.31 |
Consensus MFE | -26.58 |
Energy contribution | -26.02 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -3.24 |
Structure conservation index | 0.97 |
SVM decision value | 5.77 |
SVM RNA-class probability | 0.999993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 613450 107 + 23771897 GCGCCCUUGUGUGCAUGC-AGUGCAACUCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUCCACUGCAAGUCCUAAAAAAGAAAAAAUAAGUAAAGGAAAACAAA ((((......)))).(((-((((......((((((((((((...........)))))))))))))))))))..((((....................))))....... ( -32.25) >DroSec_CAF1 24702 107 + 1 GCGCCCUUGUGUGCAUGC-AAUGCAACUCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUCCACUGCAAGUCCUAAAAAAGAAGAAAUAAGUAAAGAACAACAAA ((((......))))....-..((((....((((((((((((...........))))))))))))...))))..................................... ( -25.30) >DroSim_CAF1 23099 107 + 1 GCGCCCUUGUGUGCAUGC-AAUGCAACUCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUCCACUGCAAGUCCUAAAAAAGAAAAAAUAAGUAAAGAACAACAAA ((((......))))....-..((((....((((((((((((...........))))))))))))...))))..................................... ( -25.30) >DroEre_CAF1 26470 108 + 1 GCGCCUUUGUGUGCAUGUGAGUGCAACUCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUUCGCUGCAAGUCCUAAAGAAGAAAAAAUAAGUAAAGAAAAACAAG ((((......))))....((.((((...(((((((((((((...........))))))))).)))).))))..))................................. ( -24.20) >DroYak_CAF1 27999 108 + 1 GCGCCCUUGUGUGCAUGUGAGUGCAACGCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUCGACUGCAAGUCCUAAAAAAGAAAAAAUAAGUAAAGAAAAACAAG ((((......))))....((.((((...(((((((((((((...........)))))))))))))..))))..))................................. ( -29.50) >consensus GCGCCCUUGUGUGCAUGC_AGUGCAACUCGAACAGCUGUUUGCCAUAACACAAAACAGCUGUUCCACUGCAAGUCCUAAAAAAGAAAAAAUAAGUAAAGAAAAACAAA ..(..(((((.(((((....)))))....((((((((((((...........))))))))))))....)))))..)................................ (-26.58 = -26.02 + -0.56)
Location | 613,450 – 613,557 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -23.92 |
Energy contribution | -23.80 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.18 |
Structure conservation index | 0.82 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 613450 107 - 23771897 UUUGUUUUCCUUUACUUAUUUUUUCUUUUUUAGGACUUGCAGUGGAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGAGUUGCACU-GCAUGCACACAAGGGCGC ........(((((..........((((....))))..(((((((((((((((((((.((......))))))))))))))......))))-))).......)))))... ( -30.70) >DroSec_CAF1 24702 107 - 1 UUUGUUGUUCUUUACUUAUUUCUUCUUUUUUAGGACUUGCAGUGGAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGAGUUGCAUU-GCAUGCACACAAGGGCGC ......((((((...........((((....))))......(((((((((((((((.((......))))))))))))))....(((((.-..)))))))))))))).. ( -29.80) >DroSim_CAF1 23099 107 - 1 UUUGUUGUUCUUUACUUAUUUUUUCUUUUUUAGGACUUGCAGUGGAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGAGUUGCAUU-GCAUGCACACAAGGGCGC ......((((((...........((((....))))......(((((((((((((((.((......))))))))))))))....(((((.-..)))))))))))))).. ( -29.80) >DroEre_CAF1 26470 108 - 1 CUUGUUUUUCUUUACUUAUUUUUUCUUCUUUAGGACUUGCAGCGAAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGAGUUGCACUCACAUGCACACAAAGGCGC ...((((((.............((((.....))))..((((((..(((((((((((.((......)))))))))))))...)))))).............)))))).. ( -26.30) >DroYak_CAF1 27999 108 - 1 CUUGUUUUUCUUUACUUAUUUUUUCUUUUUUAGGACUUGCAGUCGAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGCGUUGCACUCACAUGCACACAAGGGCGC (((((..................((((....))))..(((((((((((((((((((.((......))))))))))))))).))))))...........)))))..... ( -28.60) >consensus UUUGUUUUUCUUUACUUAUUUUUUCUUUUUUAGGACUUGCAGUGGAACAGCUGUUUUGUGUUAUGGCAAACAGCUGUUCGAGUUGCACU_GCAUGCACACAAGGGCGC ........(((((..........((((....))))..(((((..((((((((((((.((......))))))))))))))...))))).............)))))... (-23.92 = -23.80 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:40 2006