Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,041,809 – 6,041,903 |
Length | 94 |
Max. P | 0.819036 |
Location | 6,041,809 – 6,041,903 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -16.75 |
Energy contribution | -16.78 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.30 |
Mean z-score | -2.34 |
Structure conservation index | 0.70 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6041809 94 - 23771897 GGCCAAUUCUUUCAAUAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC-------AUAC----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((...........-------....----.........)))))))))))....))))))))))... ( -22.36) >DroSec_CAF1 95714 94 - 1 GGCCAGUUCUUUUAACGAGGCUUUAUCCAGUUUGGUUAAGCUAAUGCACACAC-------AUAU----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((..((((.....-------....----.....)))))))))))))))....)))))).)))... ( -27.44) >DroSim_CAF1 106854 94 - 1 GGCCAGUUCUUUUAACAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC-------AUAU----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((...........-------....----.........)))))))))))....)))))).)))... ( -22.96) >DroEre_CAF1 97930 105 - 1 GGCCAGUUCUUUUAAUAAGGCUUUAUCCAGUUUGGUUAGGCUAAAACCCACACUAUGUACAUAUGUAUAUUUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((......((....((((((....))))))...))..)))))))))))....))))))))))... ( -25.90) >DroYak_CAF1 100998 95 - 1 GGCCAGUUCUUUUAAUAAGGCUUUAUCCAAUUUGGUUAGGCUAAAACACACAC-------AUAUUCA---UUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((...........-------.......---.......)))))))))))....))))))))))... ( -22.01) >DroAna_CAF1 105012 84 - 1 GGCCAAUUCU---AAUUUGGUUUUAUCCAGUUUCG----GUUCAUGUACGCAC-------AGGG----G---CUGCAGGUUUAACCGGUAUUAGCCUUAGCCUUU (((.((..((---(((((((((..(((((((..(.----((.(......).))-------.)..----)---)))..)))..)))))).)))))..)).)))... ( -23.30) >consensus GGCCAGUUCUUUUAAUAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC_______AUAU____ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((...................................)))))))))))....)))))).)))... (-16.75 = -16.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:35 2006