| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,040,609 – 6,040,704 |
| Length | 95 |
| Max. P | 0.750276 |
| Location | 6,040,609 – 6,040,704 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -32.17 |
| Consensus MFE | -21.45 |
| Energy contribution | -22.92 |
| Covariance contribution | 1.46 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6040609 95 + 23771897 AUGGCAGGUGGCAAUGGCAGUGA--UUCGCUGCCGCCUAGCAUGGACUUUGAUGACAUACUCCCCCUGAUCGGGGAGUUUGGCCGAUAUCAGAAGCU ...((((((((((.(((.(....--)))).)))))))).))..((..(((((((.((.(((((((......))))))).)).....)))))))..)) ( -36.00) >DroGri_CAF1 142239 83 + 1 UUGACA----GC---------GACACCCACCG-CGCCCACCCUCGAUUUUGAUGACAUUCUGCCAUUGAUUGGAGAAUUUGGUCGAUAUCAGAAGAU ......----((---------(........))-)..........(((.(((((.(.(((((.(((.....)))))))).).))))).)))....... ( -18.80) >DroSec_CAF1 94526 95 + 1 GUGGCCGGUGGCAAUGGUAGUGA--UUCGCUGCCACCUAGCAUGGACUUUGAUGACAUACUCCCCCUGAUCGGGGAGUUUGGCCGAUAUCAGAAGCU .((((((((((((.(((......--.))).))))))).....................(((((((......)))))))..)))))............ ( -35.20) >DroSim_CAF1 105671 95 + 1 GUGUCCGGUGGCAAUGGUAGUGA--UUCGCUGCCACCUAGCAUGGACUUCGAUGACAUACUUCCCCUGAUCGGGGAGUUUGGCCGAUAUCAGAAGCU ((((..(((((((.(((......--.))).)))))))..))))((.((((((((.((.(((((((......))))))).)).....)))).)))))) ( -33.50) >DroEre_CAF1 96697 95 + 1 GCGGCCGGUGGAAAUGGCAGUGA--UUCGCUGCCACCCAGCAUGGACUUUGAUGACAUACUCCCCCUCAUCGGGGAGUUUGGCCGAUAUCAAAAGCU .((((((.(((...((((((((.--..)))))))).))).).................(((((((......)))))))..)))))............ ( -38.90) >DroYak_CAF1 99778 95 + 1 GUGGCCACCGGAAAUGGCAGUGA--UCCACUGCCACCUAGCAUGGACUUUGAUGACAUACUUCCACUCAUCGGGGAAUUUGGCCGUUAUCAAAAGCU ..((((((((....((((((((.--..)))))))).......))).(((((((((...........)))))))))....)))))............. ( -30.60) >consensus GUGGCCGGUGGCAAUGGCAGUGA__UUCGCUGCCACCUAGCAUGGACUUUGAUGACAUACUCCCCCUGAUCGGGGAGUUUGGCCGAUAUCAGAAGCU .((((.........((((((((.....))))))))....................((.(((((((......))))))).))))))............ (-21.45 = -22.92 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:34 2006