Locus 2197

Sequence ID 3L_DroMel_CAF1
Location 6,038,261 – 6,038,360
Length 99
Max. P 0.825982
window3402

overview

Window 2

Location 6,038,261 – 6,038,360
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -22.43
Consensus MFE -17.87
Energy contribution -18.53
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.80
SVM decision value 0.70
SVM RNA-class probability 0.825982
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6038261 99 - 23771897
UGGAUCAUCAAUGAAAUUGGAUCAACAGCCGUUGAAGUUCAGCGGUUUCAGAGUUUGAUGAUUUAAAUUUAAUCAUAGUUUUGUUUGUUCACACUAGAU
(((((((((((((((..((......))(((((((.....)))))))))))....)))))))))))......(((.((((..((......)).))))))) ( -23.00)
>DroSec_CAF1 92284 99 - 1
UGGAGCAUCAAUGAAAUUGGAUCAACAGCCGUUGAAGUGCAGCGGUUUCCAAACUUGAUGAUUAAAAAUUAAGCAUAUUUUUGUUUGUUCAUACUCGAU
..(((((((((.(...(((((.....((((((((.....))))))))))))).))))))).........((((((......))))))......)))... ( -23.80)
>DroSim_CAF1 103301 85 - 1
UGGAUCAUCAAUGAAAUUGGAUCAACAGCCGUUGAAGUGCAGCGGUUUCAAAACUUGAUGAUUUAAAAUUAAG--------------UUCAUACUAGAU
(((((((((((((((..((......))(((((((.....)))))))))))....)))))))))))........--------------............ ( -20.50)
>consensus
UGGAUCAUCAAUGAAAUUGGAUCAACAGCCGUUGAAGUGCAGCGGUUUCAAAACUUGAUGAUUUAAAAUUAAGCAUA_UUUUGUUUGUUCAUACUAGAU
((((((((((((((.......)))..((((((((.....)))))))).......))))))))))).................................. (-17.87 = -18.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:33 2006