Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,030,764 – 6,030,860 |
Length | 96 |
Max. P | 0.885000 |
Location | 6,030,764 – 6,030,860 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 74.46 |
Mean single sequence MFE | -17.87 |
Consensus MFE | -3.77 |
Energy contribution | -4.17 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.21 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.885000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6030764 96 - 23771897 AAAGCGUUAAUGAAAUAUAUCUAUCCAGGGAUUUCACAAGAUUUUCCGAACGACAGUGGAUGGAUAU----GUAUUUUCAACUUUUAUUUAUUAUCUUAA ..........((((((((((((((((.((((..((....))..))))..((....))))))))))))----))...)))).................... ( -22.10) >DroSec_CAF1 84897 91 - 1 AAAG-----AUAAAAGAUCUCUCUCCAGUGAUCGCACAGGAUUUUCCGAACGACAGUGGAUGGAUAU----AUAUUUUCAACUUUUAUUUAUUAUCUUAA ..((-----(((((((.......((((.((.(((....((.....))...))))).))))((((...----.....)))).))))))))).......... ( -19.50) >DroSim_CAF1 95871 91 - 1 AAAG-----AUAAAAGAUCUCUGUCCAGUGAUCGCACAGGAUUUUCCGAACGACAGUGGAUGGAUAU----GUAUUUUCAACUUUUAUUUAUUAUCUUAA ..((-----(((((((...((((((((.((.(((....((.....))...))))).))))))))..(----(......)).))))))))).......... ( -22.90) >DroEre_CAF1 87281 72 - 1 ------------------------UCAUUGCUCUUACAACAUUUUCCGAACGACAGUGGAUGGAUAU----GUAUUUUCAUCUUUUAUUUAUUAUCUUAA ------------------------.(((((.((..................)))))))((((((...----.....)))))).................. ( -7.77) >DroYak_CAF1 89996 81 - 1 AAA-------------------UUCCCUUGAAUUUACAUGAUUUUCCGAGCGACAGUGCAUGGAUAUGUAUGUAUUUUCAUCAUUUAUUUAUGGUCUUAA ...-------------------.......(((..((((((....((((.(((....))).))))....))))))..)))(((((......)))))..... ( -17.10) >consensus AAAG_____AU_AAA_AU_UCU_UCCAGUGAUCUCACAAGAUUUUCCGAACGACAGUGGAUGGAUAU____GUAUUUUCAACUUUUAUUUAUUAUCUUAA ...................................................((.((((((((((...................)))))))))).)).... ( -3.77 = -4.17 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:32 2006