Locus 2195

Sequence ID 3L_DroMel_CAF1
Location 6,029,271 – 6,029,390
Length 119
Max. P 0.974383
window3400

overview

Window 0

Location 6,029,271 – 6,029,390
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.43
Mean single sequence MFE -27.76
Consensus MFE -23.96
Energy contribution -25.24
Covariance contribution 1.28
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.86
SVM decision value 1.73
SVM RNA-class probability 0.974383
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6029271 119 - 23771897
AAAGAUUACCUAAAGUUUACUAACCUUUGCAAAAUAGCGCAUUUUCUUCUUGUAAAACCCUUUUUUCUGCAGGCGUCUGUAUGACAAUACAGAUCUUUGUCACUCCGGGGGGUAAUUUA
..((((((((.....(((((.......(((........)))..........))))).((((.......(((((.((((((((....)))))))).)))))......)))))))))))). ( -29.35)
>DroSec_CAF1 83393 119 - 1
AUAGAUUACCUAUAGUUUACUAACCUCUGCAAAAUAGCUCAUUUCCUUGUUGUAAACCCCUUUUUUCUGCAGGCGUCUGUAUGACAAUACAGAUGUUUGUCACUCCAGGGGGUAUUUUA
.((((.((((....((((((........((......)).((......))..))))))((((.......((((((((((((((....))))))))))))))......)))))))).)))) ( -33.12)
>DroSim_CAF1 94372 119 - 1
AUAGAUUACCUAUAGUUUACUAACCUUCGCAAAAUAGCUCAUUUCCUUGUUGUAAAACCCUUUUUUCUGCAGGCGUCUGUAUGACAAUACAGAUCUUUGUCACUCCGGGGGGUAAUUUA
.(((((((((.....(((((........((......)).((......))..))))).((((.......(((((.((((((((....)))))))).)))))......))))))))))))) ( -28.52)
>DroEre_CAF1 85778 119 - 1
AAAGAUUACCUAUAGUUUACUAACCUUUCUAAAAUAGCGCAUUUCCUUGUUGUUAAACCUUUUUUUCUGCAGGCGUCUGUCUGAAAAUGCAGAUCUUUGUCACUCCGGGGGGUAAUUUA
..(((((((((.(((....))).(((......(((((((........)))))))..............(((((.((((((.(....).)))))).)))))......)))))))))))). ( -24.90)
>DroYak_CAF1 88510 119 - 1
GAAGAUAUCCUAUAGUUUACUUACCUUUGCAAAAUCGCGCAUUUCCUUGUUGUAAAACCCUUUUUUCUGCAGGCGUCUGUCUGAAAAUGCAGAUCUUUGUCACUCCGGGGGGUAAUUUA
....................(((((((((((.......(((......))))))))).((((.......(((((.((((((.(....).)))))).)))))......))))))))).... ( -22.93)
>consensus
AAAGAUUACCUAUAGUUUACUAACCUUUGCAAAAUAGCGCAUUUCCUUGUUGUAAAACCCUUUUUUCUGCAGGCGUCUGUAUGACAAUACAGAUCUUUGUCACUCCGGGGGGUAAUUUA
..((((((((...............(((((((...((........))..))))))).((((.......(((((.((((((((....)))))))).)))))......)))))))))))). (-23.96 = -25.24 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:31 2006