Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,028,757 – 6,028,877 |
Length | 120 |
Max. P | 0.980957 |
Location | 6,028,757 – 6,028,877 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.78 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -19.41 |
Energy contribution | -20.23 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.15 |
Mean z-score | -2.06 |
Structure conservation index | 0.62 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6028757 120 - 23771897 UAAAAAAAAAACAACUGUGCGAAAAGGAAAUGUGACACGGACUAAUGGGUUGGUGCAUUCGCUUACUGCCAGAGUGGUAGCACUGCUUGUAAGCAGCCGUUGCAUUCAAGUAGUGUAAAU ..............(((.(((..(((((...(((.(((.((((....)))).)))))))).)))..)))))).......((((((((((...((((...))))...)))))))))).... ( -33.80) >DroSim_CAF1 94019 90 - 1 ------------------------------UGUGGCAAGGCCUAAUGGGUUGGUGAAUUCGCUUACUGAAAGAGUGGUAGCACUGCUUGUAAGCUGCCGUUGCAUUUAAAUAGUGUAAAU ------------------------------...((((.((((.....)))).........((((((...(((((((....)))).))))))))))))).(((((((.....))))))).. ( -25.00) >DroEre_CAF1 85275 112 - 1 -------UGUUCAACUGAGCAGAGUAAAAAUGUGGCAAGGCCAAAUGG-GUGGUGCAGUCGCUUACUAAAAGAGUGGCAGCACUGCUUGAAAGCAGCCGUUGCAUUUGAAUAGUUUAAGU -------(((((....)))))......(((((..((..(((.....((-(..((((.(((((((.......))))))).))))..))).......)))))..)))))............. ( -35.00) >DroYak_CAF1 88033 112 - 1 -------AGCUCAACUGAGCAACGUAAAAGUGUGGCAAGGCCAAAUGG-UUGGUGCACUCGCUUACUUAAUGAGUGGUAGCACUGCUUGAAAGUAGCCGUUACAUUUAAAUAGUGUAAAU -------.((((....)))).......(((((((((..((((....))-))(((((((.((((((.....)))))))).)))))(((.......))).)))))))))............. ( -31.90) >consensus _______AG_UCAACUGAGCAAAGUAAAAAUGUGGCAAGGCCAAAUGG_UUGGUGCAUUCGCUUACUGAAAGAGUGGUAGCACUGCUUGAAAGCAGCCGUUGCAUUUAAAUAGUGUAAAU ...........................(((((((((..(((..........(((((..((((((.......))))))..)))))(((....))).))))))))))))............. (-19.41 = -20.23 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:30 2006