Locus 2193

Sequence ID 3L_DroMel_CAF1
Location 6,021,745 – 6,021,835
Length 90
Max. P 0.617167
window3398

overview

Window 8

Location 6,021,745 – 6,021,835
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 88.86
Mean single sequence MFE -26.88
Consensus MFE -21.89
Energy contribution -22.70
Covariance contribution 0.81
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.81
SVM decision value 0.17
SVM RNA-class probability 0.617167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6021745 90 - 23771897
--GAACACCCU-UCCCUCAAUUUUGUGACCUAAGUUAACCCAGGACUUAGCAGGUCCUGGGACUUGGUCAAAGUUUUGUGUUGCACUUUGUCA
--((.......-.....(((..((.(((((.((((...(((((((((.....)))))))))))))))))).))..)))............)). ( -28.65)
>DroSec_CAF1 76441 90 - 1
--GAGCACCCU-UCCCUCAAUUUUGUGAACUAAGUUAACCCAGGACUUAGCAGGUCCUGGGACUUGGUCAAAGUUUUGUGUUGCACUUUGUCA
--.(((((...-......(((((((...(((((((...(((((((((.....)))))))))))))))))))))))..)))))........... ( -27.40)
>DroSim_CAF1 86631 90 - 1
--GAGCACCCU-UCCCUCAAUUUUGUGACCUAAGUUAACCCAGGACUUAGCAGGUCCUGGGACUUGGUCAAAGUUUUGUGUUGCACUUUGUCA
--..(((.(..-.....(((..((.(((((.((((...(((((((((.....)))))))))))))))))).))..))).).)))......... ( -28.60)
>DroEre_CAF1 78315 90 - 1
--GAACACCCU-ACCCUCAAUUCUGCGACCCAAGUUAACCCGGGACUUAGCAGGUCCCGGGAAUUGGUCAAAGUUUUGUGUUGCAGUUUGUCA
--.........-.....(((..(((((((.(((.....(((((((((.....)))))))))((((......))))))).))))))).)))... ( -30.40)
>DroYak_CAF1 80099 93 - 1
GGGAACACCCUUUUCCUCAAUGCUGUGACCCAAGUUAACCCAGGACUUAGCAGGUCCCGGGAAUUGGUCAAAGUUUUGUGUUGCAGUUUGUCA
(((....))).......(((.((((..((.(((.....(((.(((((.....))))).)))((((......))))))).))..)))))))... ( -26.70)
>DroAna_CAF1 74713 88 - 1
--AACCACC---UCCCACAACUACCCGACCCAAGUUAACCCGAGAGUUAGCAGGUCCUGGGACUUGGUCAAAGUUUUGUGUUGCAGUUUGUCA
--.......---...(((((..((..((((...((((((......))))))(((((....)))))))))...)).)))))............. ( -19.50)
>consensus
__GAACACCCU_UCCCUCAAUUUUGUGACCCAAGUUAACCCAGGACUUAGCAGGUCCUGGGACUUGGUCAAAGUUUUGUGUUGCACUUUGUCA
...............(.(((..((.(((.((((((...(((((((((.....)))))))))))))))))).))..))).)............. (-21.89 = -22.70 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:29 2006