Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,007,659 – 6,007,776 |
Length | 117 |
Max. P | 0.725498 |
Location | 6,007,659 – 6,007,776 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.67 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -23.70 |
Energy contribution | -24.70 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.22 |
Mean z-score | -1.39 |
Structure conservation index | 0.67 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6007659 117 - 23771897 CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGUGUGUUUUAUUAGCCGUAA---AGCCACGCAGUCCAGU .......((..((((...((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((.....---.))..))))..))... ( -38.80) >DroSec_CAF1 65138 119 - 1 CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACUCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU-CAGCCAAACAGUCCAGU .......((..(((....((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((......-..))...)))..))... ( -37.70) >DroSim_CAF1 74699 119 - 1 CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU-CAGCCAAGCAGUCCAGU .......((..(((....((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((......-..))...)))..))... ( -38.00) >DroEre_CAF1 66542 109 - 1 CCUCGAAGGGAUGUGAGAAAAAUGCCCCUGCUGGUUUCACUCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAGCAAGUCCGGCGUUUUUUAUUAGCCUUAAUUCAGA---AC-------- .......((((((((((......(((......)))....)))))))).)).....((((((((((((.........))))(((...........)))..))))))))---..-------- ( -30.20) >DroYak_CAF1 66458 88 - 1 CUGAGGAUGGCUGUGAGAUUGGAGCACCAGCUGCUUUCACCAGGGUGACCAGCUACUUGGAUUGGAUCCAGGCCAACUCUGGCAUCUC-------------------------------- ....(((((.(...(((.((((......(((((...((((....)))).))))).(((((((...)))))))))))))).).))))).-------------------------------- ( -31.40) >consensus CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU_CAGCCA_ACAGUCCAGU (((....)))........((((((((((.((((((..(......)..)))))).....(((((((........))))))))))))))))).............................. (-23.70 = -24.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:28 2006