Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 613,169 – 613,266 |
Length | 97 |
Max. P | 0.972626 |
Location | 613,169 – 613,266 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 97.07 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -20.81 |
Energy contribution | -21.06 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.39 |
Structure conservation index | 0.93 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 613169 97 + 23771897 GCUGAAUUUCAGUGCGUGUGCUCAGCAUUUAACUAAACUGGCACACACGCACACCAACACCAGCGAACGGAAAACGAAAAAAAAAAUUAAAACACAC ((((.......(((((((((.((((............))))..)))))))))........))))...((.....))..................... ( -22.46) >DroSec_CAF1 24427 95 + 1 GCUGAAUUUCAGUGCGUGUGCUCAGCAUUUAACUAAACUGGCACACACGCACACCAACACCAGCGAACGGAAAACGAAAA--AAAAUUAAAACACAC ((((.......(((((((((.((((............))))..)))))))))........))))...((.....))....--............... ( -22.46) >DroSim_CAF1 22821 95 + 1 GCUGAAUUUCAGUGCGUGUGCUCAGCAUUUAACUAAACUGGCACACACGCACACCAACACCAGAGAACGGAAAACGAAAA--AAAAUUAAAACACAC ......((((.(((((((((.((((............))))..))))))))).......((.......)).....)))).--............... ( -20.40) >DroEre_CAF1 26178 96 + 1 GCUGAGUUUCAGUGCGUGUGCUCAGCAUUUAACUAAACUGGCACACACGCACACCAACACCAGCGAACGGAAAACGAAAAAA-AAAUUAAAACACAC ((((.(((...(((((((((.((((............))))..)))))))))...)))..))))...((.....))......-.............. ( -24.10) >consensus GCUGAAUUUCAGUGCGUGUGCUCAGCAUUUAACUAAACUGGCACACACGCACACCAACACCAGCGAACGGAAAACGAAAA__AAAAUUAAAACACAC ((((.......(((((((((.((((............))))..)))))))))........))))...((.....))..................... (-20.81 = -21.06 + 0.25)
Location | 613,169 – 613,266 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 97.07 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -27.79 |
Energy contribution | -27.85 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.44 |
Structure conservation index | 0.99 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 613169 97 - 23771897 GUGUGUUUUAAUUUUUUUUUUCGUUUUCCGUUCGCUGGUGUUGGUGUGCGUGUGUGCCAGUUUAGUUAAAUGCUGAGCACACGCACUGAAAUUCAGC .................................(((((.(((...((((((((((..((((..........)))).))))))))))...)))))))) ( -28.30) >DroSec_CAF1 24427 95 - 1 GUGUGUUUUAAUUUU--UUUUCGUUUUCCGUUCGCUGGUGUUGGUGUGCGUGUGUGCCAGUUUAGUUAAAUGCUGAGCACACGCACUGAAAUUCAGC ...............--................(((((.(((...((((((((((..((((..........)))).))))))))))...)))))))) ( -28.30) >DroSim_CAF1 22821 95 - 1 GUGUGUUUUAAUUUU--UUUUCGUUUUCCGUUCUCUGGUGUUGGUGUGCGUGUGUGCCAGUUUAGUUAAAUGCUGAGCACACGCACUGAAAUUCAGC .((.((((((.....--...(((....(((.....)))...))).((((((((((..((((..........)))).)))))))))))))))).)).. ( -25.40) >DroEre_CAF1 26178 96 - 1 GUGUGUUUUAAUUU-UUUUUUCGUUUUCCGUUCGCUGGUGUUGGUGUGCGUGUGUGCCAGUUUAGUUAAAUGCUGAGCACACGCACUGAAACUCAGC ..............-..................(((((.(((...((((((((((..((((..........)))).))))))))))...)))))))) ( -30.70) >consensus GUGUGUUUUAAUUUU__UUUUCGUUUUCCGUUCGCUGGUGUUGGUGUGCGUGUGUGCCAGUUUAGUUAAAUGCUGAGCACACGCACUGAAAUUCAGC .................................(((((.(((...((((((((((..((((..........)))).))))))))))...)))))))) (-27.79 = -27.85 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:38 2006