Locus 2188

Sequence ID 3L_DroMel_CAF1
Location 5,984,121 – 5,984,241
Length 120
Max. P 0.549108
window3390

overview

Window 0

Location 5,984,121 – 5,984,241
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.42
Mean single sequence MFE -32.31
Consensus MFE -22.10
Energy contribution -23.98
Covariance contribution 1.88
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.68
SVM decision value 0.03
SVM RNA-class probability 0.549108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5984121 120 + 23771897
AUGAUCCUGGGUACAACUUCAAAAUCAAGUAACAUUUGAAUCGUUUCAUUUCCAUGGGCCAAAUUACGCACUGCCAUAAGUGCGUCCUCUAAAACGUUGGCCUCUGGGUUGUACAAUACU
..........(((((((.......((((((...))))))............(((.(((((((...(((((((......)))))))...........))))))).))))))))))...... ( -35.44)
>DroSec_CAF1 39576 120 + 1
AUGAUCCUGGGUACAACUCCUAAGUCAAGUAGCAUAGGAAUCGUUUCAUUUUCAUGAGCCAAAUUACGCACUGCCAUAAGUGCGUCUUCCAGAAUUUUGUCCUCUGGGUUGUACAAUAGA
......(((.((((((((((((.((......)).)))))...(.(((((....))))).).....(((((((......)))))))...(((((.........))))))))))))..))). ( -31.60)
>DroSim_CAF1 40995 120 + 1
AUGAUCCUGGGUACAACUCCUAAGUCAAGUAGCAUAGGAAUCGUUUCAUUUUCAUGGGCCAAAUUACGCACUGCCAUAAGUGCGUCUUCCAGAAUUUUGUCCUCUGGGUUGUACAAUAGA
......(((.((((((((((((.((......)).)))))............(((.((((.((((((((((((......))))))).......))))).))))..))))))))))..))). ( -31.61)
>DroEre_CAF1 39649 120 + 1
AUGAUCCUGGGUACAACUUCAGUGCCAAGGAGUAUUUGAAUCAUAUCACUUCCAUGGGCCAAAUUACGCACUGCCAUAAGUGAGUCUUCUAGUAUUUUGGCCUCCGGGUUGUACAAUAGA
....((((.(((((.......))))).))))((((.(((......)))..(((..((((((((.(((.((((......))))((....)).))).))))))))..)))..))))...... ( -34.40)
>DroYak_CAF1 41630 120 + 1
AUGAUCCUGGGUAUCACUUCACUGCCAAGGAGCAUUUGAAUCAUCUCACUUCCGUGGGCCAAAUUACGCACUGCCAUCAGUGAGUCUUCCAGAAUCUUGGCCUCUGGUUUGUACAAUAGA
(((.((((.((((.........)))).)))).)))............((..(((.(((((((......(((((....)))))..((.....))...))))))).)))...))........ ( -28.50)
>consensus
AUGAUCCUGGGUACAACUUCAAAGUCAAGUAGCAUUUGAAUCGUUUCAUUUCCAUGGGCCAAAUUACGCACUGCCAUAAGUGCGUCUUCCAGAAUUUUGGCCUCUGGGUUGUACAAUAGA
..........(((((((....................(((....)))....(((.((((((((..(((((((......)))))))..........)))))))).))))))))))...... (-22.10 = -23.98 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006