Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,968,567 – 5,968,660 |
Length | 93 |
Max. P | 0.757899 |
Location | 5,968,567 – 5,968,660 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -17.47 |
Energy contribution | -17.72 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.73 |
Structure conservation index | 0.70 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5968567 93 + 23771897 AUUUCC------------AAUUCCAUUCCUAUUCCCAUUUCGACCGGUUGA-----AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGA ......------------................(((((((((....))))-----))))).....((((((((....))))))))..((((((((.....))))).))) ( -23.70) >DroPse_CAF1 34770 92 + 1 AUUUUC------------AUUUCGAGUCCCAUUUCCAUUU-GUAUGGGUGA-----AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGA ......------------...((((((..((.(((.....-....(((((.-----.....)))))((((((((....))))))))....))).))..))))))...... ( -28.70) >DroEre_CAF1 26689 92 + 1 AUUUUC------------AAUUCCAUUCCUAUUC-CAUUUCGACCGGGUGA-----AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGA ......------------................-..((((((..(((((.-----.....)))))((((((((....)))))))).......)))))).(((....))) ( -23.30) >DroYak_CAF1 28422 110 + 1 AUUUUCAUUUUCAAUUCCAAUUCCAUUGCUAUUCCCAUUUCAAACGGGUGAAGUGAAGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUCGAGACUCGAUUGCGA ..((((...(((((............(((((((..(((((((......))))))).)))))))...((((((((....))))))))..)))))..)))).(((....))) ( -26.40) >DroAna_CAF1 27086 80 + 1 AUUUCG------------AAUUCCAAUU-------------GUUUGUCUGA-----AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGA ...(((------------(.((.(((((-------------(..((((...-----...))))..)((((((((....)))))))).....))))).)).))))...... ( -19.80) >DroPer_CAF1 38625 92 + 1 AUUUUC------------AUUUCGAGUCCCAUUUCCAUUU-GUAUGGGUGA-----AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGA ......------------...((((((..((.(((.....-....(((((.-----.....)))))((((((((....))))))))....))).))..))))))...... ( -28.70) >consensus AUUUUC____________AAUUCCAUUCCUAUUCCCAUUU_GAACGGGUGA_____AGUGGCACCCGCAGUGCGUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGA .............................................(((((...........)))))((((((((....))))))))..((((((((.....))))).))) (-17.47 = -17.72 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:20 2006