Locus 2186

Sequence ID 3L_DroMel_CAF1
Location 5,966,954 – 5,967,060
Length 106
Max. P 0.665745
window3388

overview

Window 8

Location 5,966,954 – 5,967,060
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 86.44
Mean single sequence MFE -35.64
Consensus MFE -27.30
Energy contribution -27.98
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.77
SVM decision value 0.28
SVM RNA-class probability 0.665745
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5966954 106 + 23771897
GCGGGCAAACAUCACGUGUGCCUCUUAGAAUCCUUGUGGCCUGUGUGUGU--AUGCGUAUUGGUGCUGCAUACACAUUACCAUUGUGUGUGCAGGUGAAACUGUGCUG
(((((((.((((((((.(.(((.(..((....)).).)))))))).))))--.))).........(((((((((((.......)))))))))))......)))).... ( -36.20)
>DroSec_CAF1 25093 99 + 1
GCGGGCAAACAUCACGUGUGCCUCUUAGGAUCCUUGUGGCCUGUGUGUGU--------AUUGGUGCUGCAUACACAUUCA-CUUGUGUGUGCAGGUGAAACUGUGCUG
((((.(((((((((((.(.(((.(..((....)).).)))))))).))))--------.)))...(((((((((((....-..)))))))))))......)))).... ( -34.20)
>DroSim_CAF1 25721 98 + 1
GCGGGCAAACAUCACGUGUGCCUCUUAGGAUCCUUGUGGCCUGUGUGUGU--------AUUGGUGCUGCAUACACAUUCA-CUUGUGUGUGCAGGUGAAACUGUGCU-
((((.(((((((((((.(.(((.(..((....)).).)))))))).))))--------.)))...(((((((((((....-..)))))))))))......))))...- ( -34.20)
>DroEre_CAF1 25094 95 + 1
GCGCGCAAACAUCACGUGUGCCUCUUAGCAUCCUUGUGGCCUGUCUGUGUG--------UUGGUGGUGCACACACAUUUG-CCUGUGUGUGCAGGUGCAACCG----G
(((((((.((((((((.((((......))))...)))))..))).))))))--------)((((..((((((((((....-..))))))))))......))))----. ( -35.30)
>DroYak_CAF1 26597 106 + 1
GCGGGCAAACAUCACGUGUGCCUCUCAGAAUCCUUGUGGCCUGUGUGUGUGCAUUGGUAUUGGU-GUGCAUACACAUUUG-CUUGUGUGUGCAGGUGAAACUGUGCUG
(((((((((..........(((...(((.....))).))).((((((((..((((......)))-)..))))))))))))-)))))..(..(((......)))..).. ( -38.30)
>consensus
GCGGGCAAACAUCACGUGUGCCUCUUAGAAUCCUUGUGGCCUGUGUGUGU________AUUGGUGCUGCAUACACAUUCA_CUUGUGUGUGCAGGUGAAACUGUGCUG
((((.((.((((((((.(.(((.(..((....)).).)))))))).))))...............(((((((((((.......))))))))))).))...)))).... (-27.30 = -27.98 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:19 2006