Locus 2185

Sequence ID 3L_DroMel_CAF1
Location 5,966,808 – 5,966,906
Length 98
Max. P 0.880399
window3387

overview

Window 7

Location 5,966,808 – 5,966,906
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.95
Mean single sequence MFE -26.73
Consensus MFE -20.67
Energy contribution -20.79
Covariance contribution 0.11
Combinations/Pair 1.38
Mean z-score -2.26
Structure conservation index 0.77
SVM decision value 0.91
SVM RNA-class probability 0.880399
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5966808 98 + 23771897
UUA-ACUAAC---UACUUUUCGGCGGAGCCCUUCUGCGUAUUAAGCCAAAUCGCCUUGGGUUUGGCCACUUCGAAGCCACUGUGGCAGCUACUUCCUUAAGA
...-......---........(((.((((((....(((.(((......))))))...)))))).)))........(((.....)))................ ( -25.00)
>DroSec_CAF1 24951 94 + 1
UUA-ACUAAC---UACUUUUCGGCUGAGCCCUUCUGCGAAUUAAGCCAAAUCGCCUUGGGUUUAGCCACUUCGUAGCCACUGUGGC----ACUUCCUUAAGA
...-......---........((((((((((....((((.((.....)).))))...)))))))))).....((.(((.....)))----)).......... ( -27.80)
>DroSim_CAF1 25575 98 + 1
UUA-ACUAAC---UACUUUUCGGCUGAGCCCUUCUGCGAAUUAAGCCAAAUCGCCUUGGGUUUAGCCACUUCGUAGCCACUGUGGCAGCUACUUCCUUAAGA
...-......---........((((((((((....((((.((.....)).))))...)))))))))).....((.(((.....))).))............. ( -28.70)
>DroEre_CAF1 24949 98 + 1
UUA-ACUAAC---UACUUUUCGGCUGAGUCCUGCUGCGGAUUAAGCCAAAUCCCCUUGGGCUUGGCCACUUCCAAGCCACUGUGGCAGCUACUUCCUGAAGA
...-......---...(((((((..((((.((((..((((((......))))).....(((((((......)))))))...)..))))..)))).))))))) ( -32.80)
>DroYak_CAF1 26442 98 + 1
UUA-ACUAAC---UACUUUUCGGCUGAGCCCUUCUGCGAAUUAAGCCAAAUCGCCUUGGGUUUAGCCACUUUGAAGCCACUGUGGCAGCAACUUCCUUAAGA
...-......---........((((((((((....((((.((.....)).))))...))))))))))...(((..(((.....)))..)))........... ( -28.60)
>DroAna_CAF1 24762 87 + 1
UUAAACUAAUCAAUACUAAUCG-UAGAGUCCUUU--------------AAUCGCCUUGGACUAAACCAUUUCGAGGACACUGUGUCGGCCGCUUCCUUGAGA
.....................(-(..(((((...--------------.........)))))..))..(((((((((....(((.....))).))))))))) ( -17.50)
>consensus
UUA_ACUAAC___UACUUUUCGGCUGAGCCCUUCUGCGAAUUAAGCCAAAUCGCCUUGGGUUUAGCCACUUCGAAGCCACUGUGGCAGCUACUUCCUUAAGA
.....................((((((((((....(((.............)))...))))))))))........(((.....)))................ (-20.67 = -20.79 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:18 2006