Locus 2184

Sequence ID 3L_DroMel_CAF1
Location 5,963,529 – 5,963,631
Length 102
Max. P 0.747073
window3386

overview

Window 6

Location 5,963,529 – 5,963,631
Length 102
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.06
Mean single sequence MFE -24.74
Consensus MFE -9.66
Energy contribution -9.62
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.39
SVM decision value 0.47
SVM RNA-class probability 0.747073
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5963529 102 - 23771897
GCGGUUCAGUGAGUCAGCAGGGCUCAGCUGGGCUAAA-----UAUAAAGUGUAUGAUGGAUAGCAUAUCAAGCAAGACGUUGAAUGAUAUGUCACAUACAUAAAACA
..(((((((((((((.....)))))).)))))))...-----......(((((((.((....((((((((..(((....)))..)))))))))))))))))...... ( -32.70)
>DroSec_CAF1 21709 89 - 1
GCGGUUCAGUGAGUCGGCAGGGCU------------------UAUAAAGUGUGUGAUGGAUAGCAUAUCAAGCAAGACGUUGAAUGAUAUGUCACAUACAUAAAACA
...(((..(((((((.....))))------------------)))...(((((((.......((((((((..(((....)))..)))))))))))))))....))). ( -23.71)
>DroSim_CAF1 22363 89 - 1
GCGGUUCAGUGAGUCGGGAGGGCA------------------UAUAAAGUGUAUGAUGGAUAGCAUAUCAAGCAAGACGUUGAAUGAUAUGUCACAUACAUAAAACA
.((..((...))..))........------------------......(((((((.((....((((((((..(((....)))..)))))))))))))))))...... ( -19.30)
>DroEre_CAF1 21785 82 - 1
GCGGUUCAGUGGGUCGACGGGGCU------------------UAUAAAGUGUGUGAUGGAUAGCUC-------CAGACGUUGAAUGAUAUGUCACCUGCAUGAAAAA
....(((((..(((....((((((------------------...................)))))-------).(((((........))))))))..).))))... ( -21.91)
>DroYak_CAF1 22304 100 - 1
GCGGUUCAGUGAGUCGACAGGGCUCGGCUGGGCUGUAUAUGUUAUAAAGUGUGUGAUGGAUAGCUU-------AAGAAGUGGAAUGAUAUGUCACGUGGGUGAAACA
(((((((((((((((.....))))).))))))))))...((((.......((((.((.....(((.-------....)))...)).)))).((((....)))))))) ( -26.10)
>consensus
GCGGUUCAGUGAGUCGGCAGGGCU__________________UAUAAAGUGUGUGAUGGAUAGCAUAUCAAGCAAGACGUUGAAUGAUAUGUCACAUACAUAAAACA
((.(((((....(((.....)))...................((((.....)))).))))).))...........(((((........))))).............. ( -9.66 =  -9.62 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006