Locus 2182

Sequence ID 3L_DroMel_CAF1
Location 5,942,599 – 5,942,698
Length 99
Max. P 0.862532
window3383

overview

Window 3

Location 5,942,599 – 5,942,698
Length 99
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 83.27
Mean single sequence MFE -20.15
Consensus MFE -14.92
Energy contribution -15.44
Covariance contribution 0.52
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.74
SVM decision value 0.83
SVM RNA-class probability 0.862532
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5942599 99 + 23771897
GUCUUGAUAUCACUUAUGAAAACCUUUUUUCGGUUAACCACAAUAUUUAGCCGAAAAUGGUUCCGCAUAUUAAAAUAUUAUUUUUCAAAGA---------UAAAAUGG
((((((((((....((((..((((..(((((((((((.........))))))))))).))))...)))).....))))))........)))---------)....... ( -19.50)
>DroSec_CAF1 844 103 + 1
GUCUUGAUAUCACUUAUGAAAACCUUUUUUGGGUUAACCACAAUAUUGAGCCCAAAA-GGUUCCGCAUAUCAAAAUAUUAAUUUACAUAUACCCCUC----AGAAAGG
...(((((((....((((..(((((((..((((((.............)))))))))-))))...)))).....)))))))............(((.----....))) ( -18.32)
>DroSim_CAF1 843 108 + 1
GUCUUAAUUUCACUUAUGAAAACCUUUUUUGGGUUAACCACAAUAUUGAGCCCAAAAUGGUUCCGCAUAUCAAAAUAUUAAUUUACAUAGACCACUUAUCUAGAAAGG
.......((((...((((..((((..(((((((((.............))))))))).))))...))))..................((((.......)))))))).. ( -18.32)
>DroEre_CAF1 835 106 + 1
GUCAUGCUAUCACUUAUGCAAACCUUU-UUGGGUUAACCACAAUAU-UAGCCCAAAAUGGUUCCACAUGUCAAAAUGCUAAUUUACAUAGGUCCCACAUCAAAAAAGG
...........(((((((..((((.((-(((((((((........)-)))))))))).))))...(((......)))........)))))))................ ( -22.10)
>DroYak_CAF1 843 107 + 1
GUCAUGAUAGCACUUAUGAAAACCUUU-UUGGGUUACCCACAAUAUUUAGCCCAAAAUGGUUCCGCAUAUCAAAAUGUUAAUUCACAUAGACCUCACAUCGAAAAAGG
(((.(((((((.(....)..((((.((-((((((((...........)))))))))).))))..)).)))))..((((......)))).)))................ ( -22.50)
>consensus
GUCUUGAUAUCACUUAUGAAAACCUUUUUUGGGUUAACCACAAUAUUUAGCCCAAAAUGGUUCCGCAUAUCAAAAUAUUAAUUUACAUAGACCCCACAUCUAAAAAGG
....((((((....((((..((((...(((((((((...........)))))))))..))))...)))).....))))))............................ (-14.92 = -15.44 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:14 2006