Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,942,315 – 5,942,408 |
Length | 93 |
Max. P | 0.687061 |
Location | 5,942,315 – 5,942,408 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.75 |
Mean single sequence MFE | -33.65 |
Consensus MFE | -15.72 |
Energy contribution | -16.13 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.18 |
Mean z-score | -1.95 |
Structure conservation index | 0.47 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5942315 93 - 23771897 CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCAAGCAGUGACUCCAAUCC---CGAAGAGGAGCAGGAUGA---GGAGGCAGAAGAG .........((.(((((((((((((((((((.((....)).))).))))))...(((..(((---......)))...))))))---)).))))).)).. ( -34.60) >DroGri_CAF1 37500 93 - 1 CAAAAGUCGCUGCUGUCGCUGAACUGCUGGCAGAGCAGUCAGCAUAGU---GACUCCAGCUGCAGCGAGGAGGCGCUACCCGACCAGAA---CGAGGAG ......(((...((((((((((.(((((.....)))))))))).((((---(.((((.((....))..)))).)))))...)).)))..---))).... ( -35.20) >DroEre_CAF1 559 87 - 1 CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC---CGAAGAGGA------GGA---GGACGCAGAAGAG .........((((.((((.((.(((((((((.((....)).))).))))))..((((.....---......)))------)))---))))))))..... ( -31.10) >DroYak_CAF1 559 93 - 1 CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC---CGAAGAGGAGGAGGAGGA---GGACGCAGAAGAG .........((((.((((.((.(((((((((.((....)).))).))))))..((((..(((---......)))...))))))---))))))))..... ( -35.60) >DroMoj_CAF1 562 90 - 1 CAAAAGUCGCUGCUGUCGCUCAACUGUUGGCAGAGCAGUCAGCCCAGC---GACUCCAGCGGCAAUGAAGAGGUAACGGCCGA---AGA---CCAAGAU .....(((((((..((((((.....((((((......))))))..)))---)))..)))))))........(((....)))..---...---....... ( -31.70) >DroAna_CAF1 562 93 - 1 CAAAAAUCCCUGCUGUCACUCAACUGCUGGCAGACCAGCCAGCCUAGCAGUGACUCCAAUCC---GGAGGACGAGGACGAGGU---GGUGGCCGAGGAG ......((((.((..((((((.(((((((((..........))).))))))..((((.....---)))).........)).))---))..)).).))). ( -33.70) >consensus CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC___CGAAGAGGAGCAGGAGGA___GGA_GCAGAAGAG ....((((.(((((((......)).((((((......))))))..))))).))))............................................ (-15.72 = -16.13 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:13 2006