Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 611,724 – 611,829 |
Length | 105 |
Max. P | 0.533208 |
Location | 611,724 – 611,829 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.29 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -19.78 |
Energy contribution | -20.44 |
Covariance contribution | 0.66 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 611724 105 + 23771897 UUCCAAUUCCGAUGCCGAGUACCCCGAUUGUGUGGCGUCAACCAUUACAUGCAAACUCACACCUACAGGCGAUGCCGGCAGAGUCGUCGGCAGAGGCCGCGGCAA ............((((((((........(((((((......))).)))).....)))).........(((..(((((((......)))))))...)))..)))). ( -32.52) >DroSec_CAF1 23010 83 + 1 ----------------------UUCGAUUGUGUGGCGUUAACCAUUACAUGCAAACUCACACCUACAGGCGAUGCCGGCAGAGCCGUCGGCAGAGGCCGCGGCAA ----------------------.....(((((((((((........)).......(((.(.((....)).).(((((((......))))))))))))))).)))) ( -26.90) >DroSim_CAF1 21420 83 + 1 ----------------------UUCGAUUGUGUGGCGUUAACCAUUACAUGCAAACUCACACCUACAGGCGAUGCCGGCAGAGCCGUCGGCAGAGGCCGCGGCAA ----------------------.....(((((((((((........)).......(((.(.((....)).).(((((((......))))))))))))))).)))) ( -26.90) >DroEre_CAF1 24779 82 + 1 ----------AAUGCCGAGUCCCCCGAUUGUGUGGCGUUAACCAUUACAUGCAAACUCACACCUACAG--GAUGCCGACAGGGGCCUCGGCAGA----------- ----------..(((((((.((((....(((.((((((........)).............((....)--)..))))))))))).)))))))..----------- ( -29.10) >DroYak_CAF1 26130 105 + 1 UGCCGAUGCCGAUGCCGAGUACCCGGAUUGUGUGGCGUUAACCAUUACAUGCAAACUCACACCUACAGGCGAUGCCGACAGAGGCGUCGGCAGAGGCGUCGGCAA ((((((((((..((((......((.....((((((.(((...(((...)))..))))))))).....)).((((((......))))))))))..)))))))))). ( -48.60) >consensus ___________AUGCCGAGU_CCCCGAUUGUGUGGCGUUAACCAUUACAUGCAAACUCACACCUACAGGCGAUGCCGGCAGAGCCGUCGGCAGAGGCCGCGGCAA .............................((((((.(((...(((...)))..))))))))).....(((..(((((((......)))))))...)))....... (-19.78 = -20.44 + 0.66)
Location | 611,724 – 611,829 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.29 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -17.96 |
Energy contribution | -18.50 |
Covariance contribution | 0.54 |
Combinations/Pair | 1.05 |
Mean z-score | -1.75 |
Structure conservation index | 0.51 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 611724 105 - 23771897 UUGCCGCGGCCUCUGCCGACGACUCUGCCGGCAUCGCCUGUAGGUGUGAGUUUGCAUGUAAUGGUUGACGCCACACAAUCGGGGUACUCGGCAUCGGAAUUGGAA ...(((...((..((((((..((((((..(((...))).....(((((.(((.((........)).)))..)))))...))))))..))))))..))...))).. ( -34.60) >DroSec_CAF1 23010 83 - 1 UUGCCGCGGCCUCUGCCGACGGCUCUGCCGGCAUCGCCUGUAGGUGUGAGUUUGCAUGUAAUGGUUAACGCCACACAAUCGAA---------------------- ..((((((((....)))).)))).((((.(((...))).))))(((((.(((.((........)).)))..))))).......---------------------- ( -31.20) >DroSim_CAF1 21420 83 - 1 UUGCCGCGGCCUCUGCCGACGGCUCUGCCGGCAUCGCCUGUAGGUGUGAGUUUGCAUGUAAUGGUUAACGCCACACAAUCGAA---------------------- ..((((((((....)))).)))).((((.(((...))).))))(((((.(((.((........)).)))..))))).......---------------------- ( -31.20) >DroEre_CAF1 24779 82 - 1 -----------UCUGCCGAGGCCCCUGUCGGCAUC--CUGUAGGUGUGAGUUUGCAUGUAAUGGUUAACGCCACACAAUCGGGGGACUCGGCAUU---------- -----------..(((((((.((((((.(((....--)))...(((((.(((.((........)).)))..)))))...)))))).)))))))..---------- ( -33.70) >DroYak_CAF1 26130 105 - 1 UUGCCGACGCCUCUGCCGACGCCUCUGUCGGCAUCGCCUGUAGGUGUGAGUUUGCAUGUAAUGGUUAACGCCACACAAUCCGGGUACUCGGCAUCGGCAUCGGCA .((((((.(((..((((((.(((......)))...(((((...(((((.(((.((........)).)))..)))))....)))))..))))))..))).)))))) ( -46.80) >consensus UUGCCGCGGCCUCUGCCGACGCCUCUGCCGGCAUCGCCUGUAGGUGUGAGUUUGCAUGUAAUGGUUAACGCCACACAAUCGGGG_ACUCGGCAU___________ .......(((...(((((.((....)).)))))..))).....(((((.(((.((........)).)))..)))))............................. (-17.96 = -18.50 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:36 2006