| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,927,448 – 5,927,540 |
| Length | 92 |
| Max. P | 0.541084 |
| Location | 5,927,448 – 5,927,540 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5927448 92 + 23771897 UCCAAUCCCAUGGCUCGUUUUCCGUUGGCCGUCCAAAGAGCCAUUUCAAUUCCCAUUCCUAU------UCCCAGUCCAAUUCCAGCUUCAGCUCCAAU .........(((((((........((((....)))).)))))))..................------...............(((....)))..... ( -13.10) >DroSim_CAF1 21959 86 + 1 UCCAAUCCCAUGGCUCGUUUUCCGUUGUCCGUCCAAAGAGCCAUUUCAAUUCCCAU------------UCCCAGUCCAAUUCCAGCUUCAGCUCCAAU .........(((((((......((.....))......)))))))............------------...............(((....)))..... ( -12.00) >DroEre_CAF1 19870 92 + 1 UCCAAUCCCAUGGCUCGUUUCCCGUUGGCCGUCCAAAGAGCCAUUUCAAUUCCUAUUCCCCUUGCCAUUCCCAGUCCAAUUCCAG------CUCCAAU .........(((((((........((((....)))).))))))).........................................------....... ( -11.60) >consensus UCCAAUCCCAUGGCUCGUUUUCCGUUGGCCGUCCAAAGAGCCAUUUCAAUUCCCAUUCC__U______UCCCAGUCCAAUUCCAGCUUCAGCUCCAAU .........(((((((......((.....))......)))))))...................................................... (-10.50 = -10.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:05 2006