| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,923,512 – 5,923,612 |
| Length | 100 |
| Max. P | 0.560662 |
| Location | 5,923,512 – 5,923,612 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -22.29 |
| Energy contribution | -22.10 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5923512 100 + 23771897 CGGGCCUCCUCAUUGAGGGUUUGUUUAAGCAAUCUGCGUAGGUGGACACUGGCGCAUGUUGUUGGUGUU-GCAAGUGUUGCCAGUGUUGC---------------UGUUGCGAUGU ....((((......))))..((((...(((((((..(....)..))(((((((((((.((((.......-))))))).))))))))))))---------------)...))))... ( -33.00) >DroSec_CAF1 15842 91 + 1 CAGGCCUCCUCAUUGAGGGUUUGUUGAAGCAAUCUGCGUAGGUGGACACUGGCGCAUGUUGUUGGUGUU-GCAAGUG---------UUGC---------------UGUUGCGAUGU ((((((..(.....)..))))))....((((((.(((((.(((....))).))))).)))))).(..((-(((((..---------...)---------------)..)))))..) ( -27.60) >DroSim_CAF1 17944 91 + 1 CAGGCCUCCUCAUUGAGGGUUUGUUGAAGCAAUCUGCGUGGGUGAACACUGGCGCAUGUUGUUGGUGUU-GCAAGUG---------UUGC---------------UGUUGCGAUGU ((((((..(.....)..))))))....((((((.(((((.(((....))).))))).)))))).(..((-(((((..---------...)---------------)..)))))..) ( -29.70) >DroEre_CAF1 15743 115 + 1 CGGGCCUCCUCAUUGAGGGUUUGUUCAAGCAAUCUGCGUGGGUGGACACUGGCGCAUGUUGUUGGUGUU-GCAAGUGUUGCCAGUGUUGCCAGUGUUGCUGUUGCUGUUGCGACGC ((((((..(.....)..))))))....((((((..((...((..(.(((((((((((.((((.......-))))))).)))))))))..)).))))))))(((((....))))).. ( -43.70) >DroYak_CAF1 16667 107 + 1 CGGGCCUCCUUAUUGAGGGUUUGUUACAGCAAUCUGCGUGGGUGGACACUGGCGCAUGUUGUUGGUGUU-GCAAGUGUUGCCAGUGUUGC---UGUUGCAUAUGUUGUUGC----- ((((((..(.....)..))))))...(((((((.((((..((..(.(((((((((((.((((.......-))))))).)))))))))..)---)..))))...))))))).----- ( -38.80) >DroAna_CAF1 45354 111 + 1 CGGGCCUCCUCAUUGAGGGUUUGUUUAACCAAUCUGCGUAGGUGGACAUUGGCGCAUGUUGUUGCAGUUAGCUGGUGUUGCCGAUGGUACUGAUGUUACUGAUGUUGUUG-----G ((((((..(.....)..)))))).....(((((..((((.((..(.(((..((...(((....)))....))..))))..))...(((((....).)))).)))).))))-----) ( -31.10) >consensus CGGGCCUCCUCAUUGAGGGUUUGUUGAAGCAAUCUGCGUAGGUGGACACUGGCGCAUGUUGUUGGUGUU_GCAAGUGUUGCCAGUGUUGC_______________UGUUGCGAUGU ((((((..(.....)..))))))....((((((.(((((.(((....))).))))).))))))..................................................... (-22.29 = -22.10 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:02 2006