| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,909,921 – 5,910,017 |
| Length | 96 |
| Max. P | 0.962619 |
| Location | 5,909,921 – 5,910,017 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -11.74 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5909921 96 - 23771897 CUGGUGAACAAUGCAG-GAUGC--CAUGGCAAAUGGCAGGCAAAUGGCGUUAACUUACUGACUUUAUGACACAUAAAUCGCAGCAACAG------CGCC-----------AAAUGC ...........(((..-..(((--(((.....)))))).)))..(((((((......(((..((((((...))))))...)))....))------))))-----------)..... ( -25.70) >DroPse_CAF1 4715 100 - 1 -CAGAGAACAAUGCUA-GAUGU--C-UGGCAAAUGGCAGCCAAAUGCCGUUAACUUACUGACUUUAUGACACAUAAAUCGCAGCAGCACCAGCAACAGC-----------AAAUGC -..(((.....(((((-(....--)-)))))(((((((......)))))))..))).(((..((((((...))))))...)))..(((...((....))-----------...))) ( -23.50) >DroGri_CAF1 3685 88 - 1 UUACA-------GCAGACAUGCAGC-AGGCAAAUGGCAGCCAAAUGCCGUUAACUUAGUGACUUUAUGACACAUAAAUCGCAGCAACAA------UGCU-----------GAC--- ...((-------(((....(((...-(((..(((((((......)))))))..))).((((.((((((...)))))))))).)))....------))))-----------)..--- ( -27.10) >DroMoj_CAF1 3049 89 - 1 UUGCA-------GCAGGCAUGC--C-AGGCGAAUGGCAGCCAAAUGCCGUUAACUUAGUGACUUUAUGACACAUAAAUCGCUGCAACAA------UGCC-----------AACAAA (((((-------((.(((.(((--(-(......))))))))..................((.((((((...)))))))))))))))...------....-----------...... ( -26.90) >DroAna_CAF1 30659 106 - 1 CGACAGAACAAUGCCU-GAUGU--C-UGGGAAAUGGCAGCAAAAUGCCAUUAACUUACUGACUUUAUGACACAUAAAUCGCAGCAACAG------CGGCAUAAGAACUGAAAAUGC ...(((....((((((-(.((.--(-((.(((((((((......)))))))...........((((((...)))))))).))))).)).------.))))).....)))....... ( -25.70) >DroPer_CAF1 4749 100 - 1 -GAGAGAACAAUGCUA-GAUGU--C-UGGCAAAUGGCAGCCAAAUGCCGUUAACUUACUGACUUUAUGACACAUAAAUCGCAGCAGCACCAGCAACAGC-----------AAAUGC -..(((.....(((((-(....--)-)))))(((((((......)))))))..))).(((..((((((...))))))...)))..(((...((....))-----------...))) ( -23.50) >consensus _UACAGAACAAUGCAG_GAUGC__C_UGGCAAAUGGCAGCCAAAUGCCGUUAACUUACUGACUUUAUGACACAUAAAUCGCAGCAACAA______CGCC___________AAAUGC ............((.................(((((((......)))))))........((.((((((...))))))))))................................... (-11.74 = -11.77 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:01 2006