Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,908,147 – 5,908,261 |
Length | 114 |
Max. P | 0.772998 |
Location | 5,908,147 – 5,908,261 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -47.27 |
Consensus MFE | -22.00 |
Energy contribution | -22.48 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.46 |
Mean z-score | -2.38 |
Structure conservation index | 0.47 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5908147 114 + 23771897 GGCCUCCAGGGAUAUUUCCCUGGGAAUGCCCGCUUGAAACCAGGCGGCUCCCUUAAGCUCCUGCUGCUCGGCUAGGCUGAGAUUAUCCAGGCGCAGGGCACUGUGGCCGGGAAA ((((((((((((....))))))))..((((((((((....)))))...........((.((((...((((((...))))))......)))).)).)))))....))))...... ( -53.70) >DroVir_CAF1 438 114 + 1 CACCUCCAGUGAGAUCUCUCUGGGUAUGCCCGCCUGAUACCAGGCGGCACCUUUCAGCUCUUGCUGCUCGGCCAGGCUCAGGUUGUCCAGGCGCAAUGGUGAAUUCGCCGCAAA ....(((((.((....)).)))))..((((((((((....)))))(((((((...(((.((.(((....))).))))).))).))))..)).)))..((((....))))..... ( -41.90) >DroGri_CAF1 626 114 + 1 CACCUCCAGUGAGAUCUCACGUGGUAUGCCCGCCUGAUACCACGCGGCGCCCUUCAGCUCCUGCUGCUCCGCUAAACUGAGAUUGUCCAAUCGCAGUGAUGAAUUCGCCGCAAA ........((((....))))(((((((.........)))))))(((((((....((((....))))....))...((((.((((....)))).)))).........)))))... ( -38.20) >DroEre_CAF1 445 114 + 1 GACCUCCAGUGAGAUUUCCCGGGGAAUGCCCGCCUGAAACCAGGCGGCUCCCUUAAGCUCCUGCUGCUCUGACAGGCUGAGGUUAUCCAGGCGCAGCGAGCCAUGGGUGGGAAA ...(((....))).(((((((((((..(((.(((((....)))))))))))))...((((((((.((.(((...(((....)))...))))))))).)))).......)))))) ( -46.80) >DroMoj_CAF1 599 114 + 1 CACUUCCAGUGAGAUCUCCCUGGGUAUGCCCGCCUGAUACCAGGCGGCACCCUUCAGCUCCUGCUGUUCGGCCAGGCUGAGGUUGUCCAGGCGCAAGGGGGAACUCGCUGCAAA ......(((((((.(((((((..((..(((.(((((....)))))((((.(((.(((((...(((....)))..)))))))).))))..))))).))))))).))))))).... ( -54.70) >DroAna_CAF1 28453 114 + 1 GACCUCCAGGGAUAUCUCCCGUGGAAUCCCAGCCUGAAACCAGGCUGCACCCUUCAGUUCCUGUUGCUCUGCCAGACUGAGAUUAUCCAGUCGCAGGGCAGUGUGUCCGGGGAA ....((((((((....)))).)))).((((((((((....))))))((((....(((...))).((((((((..(((((.(.....)))))))))))))))))).....)))). ( -48.30) >consensus CACCUCCAGUGAGAUCUCCCGGGGAAUGCCCGCCUGAAACCAGGCGGCACCCUUCAGCUCCUGCUGCUCGGCCAGGCUGAGAUUAUCCAGGCGCAGGGAAGAAUGCGCGGCAAA ........(((.....((((.((((....(((((((....))))))).))))....((.((((...(((.(.....).)))......)))).)).))))......)))...... (-22.00 = -22.48 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006