Locus 2170

Sequence ID 3L_DroMel_CAF1
Location 5,907,468 – 5,907,581
Length 113
Max. P 0.997826
window3368

overview

Window 8

Location 5,907,468 – 5,907,581
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -40.92
Consensus MFE -36.24
Energy contribution -36.56
Covariance contribution 0.32
Combinations/Pair 1.06
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 2.94
SVM RNA-class probability 0.997826
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5907468 113 - 23771897
GUGCUGACGACGGUUGACGUGGCUACCAAUAAAUAGGGUCCAUGUCCAUGUGUACUCG-----GGCCGGCAAAGGCCCACCUGUCCGACAGGUGCUGCAAAAAGUGCACAAACAUU--UU
..((((....)))).(((((((...((........))..)))))))..((((((((.(-----((((......)))))(((((.....))))).........))))))))......--.. ( -41.60)
>DroSec_CAF1 33605 111 - 1
GUGCUGACGAUGGUUGACGUGGCUACCAAUAAAUAGGGUCCAUGUCCAUGUGUACUCG-----GGCCGGCAAAGGCCCACCUGUCCGACAGGUGCUGCAAAAAGUGCACAAA--UU--UU
...............(((((((...((........))..)))))))..((((((((.(-----((((......)))))(((((.....))))).........))))))))..--..--.. ( -40.30)
>DroSim_CAF1 33577 111 - 1
GUGCUGACGACGGUUGACGUGGCUACCAAUAAAUAGGGUCCAUGUCCAUGUGUACUCG-----GGCCGGCAAAGGCCCACCUGUCCGACAGGUGCUGCAAAAAGUGCACAAA--UU--UU
..((((....)))).(((((((...((........))..)))))))..((((((((.(-----((((......)))))(((((.....))))).........))))))))..--..--.. ( -41.60)
>DroEre_CAF1 35539 114 - 1
GUGCUGACGACGGUUGACGUGGCUACCAAUAAAUAGGUUCCAUGUCCAUGUGUACUCU-----GGCCGGCAAAGGCCCACCUGGCCGACAGGUGCUGCAAAAAGGCCACAAAU-UUUUUU
((((.(((....)))(((((((..(((........))).))))))).....))))..(-----(((((((....)))((((((.....)))))).........))))).....-...... ( -38.70)
>DroYak_CAF1 35182 117 - 1
GUGCUAACGACGGUUGACGUGGCUACCAAUAAAUAGGGUCCAUGUCCAUGUGUACUCUGCAAUGGUCGGCGAAGGCCCACCUGUCCGGCAGGUGCUGCAAAAAGUGCACAAAA-CU--UU
((.(....)))(((((((((((...((........))..)))))))..((((((((.((((......(((....)))((((((.....)))))).))))...)))))))).))-))--.. ( -42.40)
>consensus
GUGCUGACGACGGUUGACGUGGCUACCAAUAAAUAGGGUCCAUGUCCAUGUGUACUCG_____GGCCGGCAAAGGCCCACCUGUCCGACAGGUGCUGCAAAAAGUGCACAAA__UU__UU
..((((....)))).(((((((...((........))..)))))))..((((((((.......((((......))))((((((.....))))))........)))))))).......... (-36.24 = -36.56 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:59 2006