Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 609,277 – 609,367 |
Length | 90 |
Max. P | 0.999796 |
Location | 609,277 – 609,367 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -14.76 |
Energy contribution | -15.32 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -3.73 |
Structure conservation index | 0.59 |
SVM decision value | 4.10 |
SVM RNA-class probability | 0.999796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 609277 90 + 23771897 GGCGCCAUUUUGUUGGCGUCUAUCAUAUCAUCACCAUGUA--------UAUAU-U------AUUUGGUGUAUAUAUGUAUACAAUGCAAACGCAUAUUUACACAU (((((((......)))))))((((((((...(((((.(((--------.....-)------)).)))))...))))).)))..((((....)))).......... ( -26.00) >DroSec_CAF1 20613 77 + 1 GGCGCCAUUUUGUUGGCGUC-AUCAUAU---CCCCAUG------------UAUAU------AUUUGGUGUAUA------UACAAUGCAGACGCAUAUUUACACAU (((((((......)))))))-.......---.....((------------(((((------((.....)))))------))))((((....)))).......... ( -23.20) >DroSim_CAF1 18988 88 + 1 GGCGCCAUUUUGUUGGCGUCUAUCAUAU---CACCAUGUA--------UGUAUAU------AUUUGGUGUAUAUACAUAUACAAUGCAGACGCAUAUUUACACAU (((((((......)))))))........---.....((((--------(((((((------((.....)))))))))))))..((((....)))).......... ( -27.20) >DroYak_CAF1 23392 98 + 1 GGCGCCAUUUUGUUGGCAUCUAUCAUAU---CACUAUAUAUACUCGUAUGUGCAUAUAUGGAUAUGGUAUA----UAUAUACAAUGCAGACGCAUAUUCACACAU ...((((......))))...((((((((---(..(((((.(((......))).)))))..)))))))))..----........((((....)))).......... ( -23.10) >consensus GGCGCCAUUUUGUUGGCGUCUAUCAUAU___CACCAUGUA________UGUAUAU______AUUUGGUGUAUA__UAUAUACAAUGCAGACGCAUAUUUACACAU (((((((......)))))))..............................................(((((......))))).((((....)))).......... (-14.76 = -15.32 + 0.56)
Location | 609,277 – 609,367 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -12.26 |
Energy contribution | -12.32 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.24 |
Mean z-score | -2.86 |
Structure conservation index | 0.55 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 609277 90 - 23771897 AUGUGUAAAUAUGCGUUUGCAUUGUAUACAUAUAUACACCAAAU------A-AUAUA--------UACAUGGUGAUGAUAUGAUAGACGCCAACAAAAUGGCGCC .((((((...((((....))))..))))))(((((.(((((...------.-.....--------....)))))...))))).....(((((......))))).. ( -21.62) >DroSec_CAF1 20613 77 - 1 AUGUGUAAAUAUGCGUCUGCAUUGUA------UAUACACCAAAU------AUAUA------------CAUGGGG---AUAUGAU-GACGCCAACAAAAUGGCGCC ............((((((.(((.(((------((((.......)------)))))------------)))).))---)).....-...((((......)))))). ( -18.70) >DroSim_CAF1 18988 88 - 1 AUGUGUAAAUAUGCGUCUGCAUUGUAUAUGUAUAUACACCAAAU------AUAUACA--------UACAUGGUG---AUAUGAUAGACGCCAACAAAAUGGCGCC ............((((((((((..(.((((((((((.......)------)))))))--------)).)..)))---......)))))((((......)))))). ( -23.40) >DroYak_CAF1 23392 98 - 1 AUGUGUGAAUAUGCGUCUGCAUUGUAUAUA----UAUACCAUAUCCAUAUAUGCACAUACGAGUAUAUAUAGUG---AUAUGAUAGAUGCCAACAAAAUGGCGCC ..(((((.(((((((.......))))))).----)))))(((((((((((((((........)))))))).).)---)))))......((((......))))... ( -26.20) >consensus AUGUGUAAAUAUGCGUCUGCAUUGUAUAUA__UAUACACCAAAU______AUAUACA________UACAUGGUG___AUAUGAUAGACGCCAACAAAAUGGCGCC ..(((((.(((((((.......))))))).....)))))............................((((.......)))).....(((((......))))).. (-12.26 = -12.32 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:34 2006