Locus 2167

Sequence ID 3L_DroMel_CAF1
Location 5,892,807 – 5,892,909
Length 102
Max. P 0.829437
window3364

overview

Window 4

Location 5,892,807 – 5,892,909
Length 102
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.09
Mean single sequence MFE -21.15
Consensus MFE -16.27
Energy contribution -16.47
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.71
SVM RNA-class probability 0.829437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5892807 102 - 23771897
UUCCUCUUUCACCCAA------------GCCAUUGUCUUCUCAUCUCCAGACACCUACCCGCUGUCCAAGGAGAAUCCUUGGUUCUACUGCUGGAUUACGGCCGCCAUCUUCUC
................------------(((..(((((..........)))))....((.((.((((((((.....))))))....)).)).)).....)))............ ( -21.50)
>DroSec_CAF1 19069 106 - 1
UCCCUCUUCCAUUCAUUCCU--------UCCACUGUCUUCUCAUCUCCAGACACCUAUCCGCUGUCCAAGGAGAAUCCCUGGUUCUACUGCUGGAUUACGGCGGCCAUCUUCUC
....................--------.....(((((..........))))).....((((((((((.(((((((.....))))).))..))))...)))))).......... ( -21.20)
>DroSim_CAF1 19273 102 - 1
UCCCUAUUUCAUUCAG------------CCCACUGUCUUCUCAUCUCCAGACACCUACCCGCUGUCCAAGGAGAAUCCCUGGUUCUACUGCUGGAUUACGGCGGCCAUCUUCUC
...............(------------((...(((((..........))))).....(((..(((((.(((((((.....))))).))..)))))..))).)))......... ( -22.80)
>DroEre_CAF1 20827 102 - 1
UCCCACCACCACUCACCC------------CAUUGCCCUCUCAUCCCCAGACACCUAUCCGCUGUCCAAGGAGAAUCCCUGGUUCUACUGCUGGAUUACGGCGGCCAUCUUCUC
..................------------............................((((((((((.(((((((.....))))).))..))))...)))))).......... ( -18.70)
>DroYak_CAF1 19471 114 - 1
UCCCUGUUCAACUCACCCCACACCCAACACCAUUGUCUUCUCAUCUGCAGACACCUAUCCGCUGUCCAAGGAGAAUCCCUGGUUCUACUGCUGGAUUACGGCGGCCAUCUUCUC
.................................(((((.(......).))))).....((((((((((.(((((((.....))))).))..))))...)))))).......... ( -23.20)
>DroAna_CAF1 41867 100 - 1
-----GUUGGACUCAUACCU--------UA-AUACUCAUACUGUUUACAGAUACCUAUCCGCUGUCGAAGGAGAAUCCCUGGUUCUAUUGCUGGAUAACGGCGGCCAUCUUUUC
-----..(((..........--------..-.........(((....)))........((((((((....))..((((..(((......)))))))..)))))))))....... ( -19.50)
>consensus
UCCCUCUUCCACUCAC_C__________UCCAUUGUCUUCUCAUCUCCAGACACCUAUCCGCUGUCCAAGGAGAAUCCCUGGUUCUACUGCUGGAUUACGGCGGCCAUCUUCUC
..........................................................((((((((((.(((((((.....))))).))..))))...)))))).......... (-16.27 = -16.47 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:55 2006