Locus 2166

Sequence ID 3L_DroMel_CAF1
Location 5,892,135 – 5,892,245
Length 110
Max. P 0.597799
window3363

overview

Window 3

Location 5,892,135 – 5,892,245
Length 110
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 75.29
Mean single sequence MFE -23.77
Consensus MFE -13.61
Energy contribution -15.69
Covariance contribution 2.08
Combinations/Pair 1.34
Mean z-score -1.66
Structure conservation index 0.57
SVM decision value 0.13
SVM RNA-class probability 0.597799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5892135 110 + 23771897
GUGGAGUUAAAUUCAAAUGCUAAA----AUAGAGCUUGCAGCUUAAAUCUGAAUUUCAUUUUUGCUAUGAUUUGAUAACCUGAGUAAGCUUUAAACUAAGCUUUUUAACUUAUA
...((((((((.......(((...----.((((((((((.......(((......((((.......))))...))).......)))))))))).....)))..))))))))... ( -19.64)
>DroSec_CAF1 18378 109 + 1
GUGGAGUUAAAUUCAAAUGCUAAA----GUAGAGCUUACUGCUUAAAUCUGAAUUUAAU-UUCGCUAUGAUUUGAUAACCUCAGUAAACUUUAAACUAAGCGUUUUAACUUAUU
(((((((((((((((.((....((----((((......))))))..)).))))))))))-))))).((((.((((.(((((.(((.........))).)).))))))).)))). ( -24.00)
>DroSim_CAF1 18585 109 + 1
GUGGAGUUAAAUUCAAAUGCUAAA----GUAGAGCUUACUGCUUAAAUCUGAAUUUAAU-UUCGCUAUGAUUUGAUAACCUCAGUAAGCUUUAAACUAAGCGUUUUAACUUAUG
...((((((((.....(((((...----.((((((((((((.(((((((((((......-))))....)))))))......)))))))))))).....)))))))))))))... ( -28.20)
>DroEre_CAF1 20128 112 + 1
GUGAAGGUUAAGUUCAGUGCUACACUCAGCAUAGUGUGCUGUUUACAUUUCAAUUGCAU-U-UGGUAUGAUUUGAUAGCCUUAGUAAGCUUUGAGCUAAGCGCUUUGCCUUAUU
(..((((((.(((((((.((((((((......)))))((((((..(((.((((......-)-))).)))....)))))).......))).))))))).))).)))..)...... ( -31.50)
>DroYak_CAF1 18790 95 + 1
GUGGAGGAUAAGUUGACUGCUGUAU--------GUAUGCUGCUUAAAUUUCAAUUUAAU-UUUGAUAUGAU----UAGCCUUAGUAAGCUUUGAACUAAGCGUUUGUA------
(..((.(...((((.(..(((.(((--------....((((.(((....((((......-.))))..))).----))))....))))))..).))))...).))..).------ ( -15.50)
>consensus
GUGGAGUUAAAUUCAAAUGCUAAA____GUAGAGCUUGCUGCUUAAAUCUGAAUUUAAU_UUUGCUAUGAUUUGAUAACCUCAGUAAGCUUUAAACUAAGCGUUUUAACUUAUU
...((((((((.....(((((........((((((((((((.(((((((...................)))))))......)))))))))))).....)))))))))))))... (-13.61 = -15.69 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:54 2006