Locus 2165

Sequence ID 3L_DroMel_CAF1
Location 5,889,297 – 5,889,397
Length 100
Max. P 0.889297
window3362

overview

Window 2

Location 5,889,297 – 5,889,397
Length 100
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -20.71
Consensus MFE -12.67
Energy contribution -13.31
Covariance contribution 0.64
Combinations/Pair 1.25
Mean z-score -1.96
Structure conservation index 0.61
SVM decision value 0.96
SVM RNA-class probability 0.889297
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5889297 100 - 23771897
AGUGAACAACAUUU--------CACUAUCCAUACUUCGGUGUAACUCUCAGUCCCGGAAACAGCCCU-UAUUUUAAGAGAAACAUUGAUUGAACAAAUGUUUACAUUAA
.(((((((......--------........((((....)))).....((((((..(....)....((-((...)))).........)))))).....)))))))..... ( -18.70)
>DroSec_CAF1 15476 99 - 1
AGUGAACAACAUUU--------CACCAUCCAUACUUCAGUGUAACUCUCAG-UCCAGAAACAGCCCU-UAUUUUAAGAGAGACACUGAUUGAACAAAUGUUUACAUCGA
.(((((((....((--------((...........(((((((..(((((..-...............-........)))))))))))).))))....)))))))..... ( -19.71)
>DroSim_CAF1 15657 96 - 1
AGUGAACAACAUUUCACCAUUUCACCAUCCAUACUUCAGU------------CCCGGAAACAUCCCU-UAUUUUAAGAGAGACACUGAUUGAACAAAUGUUUACAUCGA
.(((((((....((((...................(((((------------..((....).((.((-((...)))).)))..))))).))))....)))))))..... ( -13.25)
>DroEre_CAF1 17221 100 - 1
AGUGAACAAUAUUU--------CACCAUCCAUUCUUCAGUGUAACUCCGAGGUCCGGAAACAGCGCU-UCUUUCAGGAGGGACACUGAUUGAACAAAUGUUUACAUUGA
.(((((((....((--------((...........(((((((..(((((((((.((....).).)))-)).....))))..))))))).))))....)))))))..... ( -29.60)
>DroYak_CAF1 15903 93 - 1
AGUGAAUAACAUUU--------CAGCAUACAAACUUCAGUGUGACUCGCA--------GUCAGUUUUCUAUUUUGAGAGGGGCACUGAUUGAACAAAUGUUUACAUCGA
.(((((((....((--------(((..........(((((((..(((.((--------(..((....))...))).)))..))))))))))))....)))))))..... ( -22.30)
>consensus
AGUGAACAACAUUU________CACCAUCCAUACUUCAGUGUAACUCUCAG_CCCGGAAACAGCCCU_UAUUUUAAGAGAGACACUGAUUGAACAAAUGUUUACAUCGA
.(((((((...........................(((((((..((((...........................))))..)))))))((....)).)))))))..... (-12.67 = -13.31 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:53 2006