Locus 2163

Sequence ID 3L_DroMel_CAF1
Location 5,874,703 – 5,874,809
Length 106
Max. P 0.625123
window3359

overview

Window 9

Location 5,874,703 – 5,874,809
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 83.13
Mean single sequence MFE -33.15
Consensus MFE -22.87
Energy contribution -23.77
Covariance contribution 0.89
Combinations/Pair 1.27
Mean z-score -1.97
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.625123
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5874703 106 + 23771897
GAAGUCCAAGGGCAAUCGUGGUCAAAGGGCUCCGGGCAAGAAGGCGCAAGCCGGUCGCAAACGUCGCUAGGAAGAAUU-ACACAUGCCUUAGGACACUUUAAUUAAC
...((((.((((((...((((((....)))(((.(((.....(((....))).(.((....)).)))).)))......-.))).)))))).))))............ ( -35.70)
>DroPse_CAF1 1149 105 + 1
GAAGCCUAAGGGCAACCACGGCCAGCGUGCACCCGGCAAAAAGGCCCAGGCUGGGCGCAAACGUCGCU--GAAGGAUAAUCAAAGGCCUCAGGACAUUUUUAAUAAC
((.((((..((....)).((((..((((((.((((((............)))))).))..)))).)))--)............)))).))................. ( -33.50)
>DroSec_CAF1 1162 106 + 1
GAAGUCCAAGGGCAAUCGUGGUCAAAGGGCUCCGGGCAAAAAGGCGCAAGCCGGUCGCAAACGUCGCUAGGAAGAAUU-ACACAUGCCUUAGGACACUUUAAUUAAC
...((((.((((((...((((((....)))(((.(((.....(((....))).(.((....)).)))).)))......-.))).)))))).))))............ ( -35.70)
>DroEre_CAF1 1355 106 + 1
GAAGUCAAAGGGCAAUCGUGGUCAAAGGGCUCCUGGCAAGAAGACGCAAGCCGGACGCAAACGUCGCUAGGAGGAAUU-ACACAUGCCUUAGGACACUUUAAUUAAC
...(((..((((((...(((.........((((((((.....(.(....).).((((....)))))))))))).....-.))).))))))..)))............ ( -33.66)
>DroYak_CAF1 1169 106 + 1
GAAGUCCAAGGGCAAUCGUGGUCAGAGAGCUCCAGGCAAGAAGGCGCAAGCCGGUCGCAAACGUCGCUAGGAAGAAUU-UCACAUGCCUUAGGACAUUUUAAUUAAC
...((((.((((((...((((.........(((.(((.....(((....))).(.((....)).)))).)))......-)))).)))))).))))............ ( -33.46)
>DroAna_CAF1 1168 100 + 1
GAAGCCCAAGGGUAAUCGUGGCCAGAGGGCACCCGGCAAGAAGGCGCAAGCUGGACGCAAACGUCGUUAGAAGAAA-------AUGCUUUAGGAUUCUUUUAUAAAC
(((((((...(((.......)))...)))).((.((((....(((....))).((((....))))...........-------.))))...)).))).......... ( -26.90)
>consensus
GAAGUCCAAGGGCAAUCGUGGUCAAAGGGCUCCCGGCAAGAAGGCGCAAGCCGGUCGCAAACGUCGCUAGGAAGAAUU_ACACAUGCCUUAGGACACUUUAAUUAAC
...((((.((((((......(((....)))(((.(((.....(((....)))((.((....))))))).)))............)))))).))))............ (-22.87 = -23.77 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:50 2006